Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDKL5O76039 EDA-201ENST00000338901 1233 ntBASIC25.15■■□□□ 1.62
CDKL5O76039 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.15■■□□□ 1.62
CDKL5O76039 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
CDKL5O76039 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CDKL5O76039 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.15■■□□□ 1.62
CDKL5O76039 AC110285.6-201ENST00000617652 491 ntBASIC25.15■■□□□ 1.62
CDKL5O76039 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CDKL5O76039 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDKL5O76039 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC25.14■■□□□ 1.62
CDKL5O76039 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.14■■□□□ 1.62
CDKL5O76039 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC25.14■■□□□ 1.62
CDKL5O76039 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
CDKL5O76039 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC25.14■■□□□ 1.62
CDKL5O76039 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC25.14■■□□□ 1.62
CDKL5O76039 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.14■■□□□ 1.62
CDKL5O76039 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CDKL5O76039 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
CDKL5O76039 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC25.14■■□□□ 1.62
CDKL5O76039 AC126544.1-201ENST00000580842 1059 ntBASIC25.14■■□□□ 1.62
CDKL5O76039 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDKL5O76039 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDKL5O76039 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CDKL5O76039 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDKL5O76039 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
CDKL5O76039 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CDKL5O76039 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC25.13■■□□□ 1.61
CDKL5O76039 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.13■■□□□ 1.61
CDKL5O76039 AC027682.1-201ENST00000562846 899 ntBASIC25.13■■□□□ 1.61
CDKL5O76039 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.13■■□□□ 1.61
CDKL5O76039 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.13■■□□□ 1.61
CDKL5O76039 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDKL5O76039 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC25.12■■□□□ 1.61
CDKL5O76039 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CDKL5O76039 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.12■■□□□ 1.61
CDKL5O76039 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDKL5O76039 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDKL5O76039 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.12■■□□□ 1.61
CDKL5O76039 AC008764.7-201ENST00000593779 1081 ntBASIC25.12■■□□□ 1.61
CDKL5O76039 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.12■■□□□ 1.61
CDKL5O76039 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDKL5O76039 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CDKL5O76039 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.12■■□□□ 1.61
CDKL5O76039 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDKL5O76039 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDKL5O76039 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDKL5O76039 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
CDKL5O76039 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDKL5O76039 AICDA-202ENST00000537228 667 ntTSL 5 BASIC25.11■■□□□ 1.61
CDKL5O76039 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.11■■□□□ 1.61
CDKL5O76039 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.11■■□□□ 1.61
CDKL5O76039 AL355001.2-201ENST00000620617 1191 ntBASIC25.11■■□□□ 1.61
CDKL5O76039 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC25.11■■□□□ 1.61
CDKL5O76039 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDKL5O76039 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC25.11■■□□□ 1.61
CDKL5O76039 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC25.11■■□□□ 1.61
CDKL5O76039 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
CDKL5O76039 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 IGHV3-19-201ENST00000521488 291 ntBASIC25.1■■□□□ 1.61
CDKL5O76039 AC133561.4-201ENST00000566112 224 ntBASIC25.1■■□□□ 1.61
CDKL5O76039 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 FAM99A-202ENST00000538190 1989 ntBASIC25.1■■□□□ 1.61
CDKL5O76039 BID-212ENST00000614949 1988 ntTSL 5 BASIC25.1■■□□□ 1.61
CDKL5O76039 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDKL5O76039 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC25.09■■□□□ 1.61
CDKL5O76039 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC25.09■■□□□ 1.61
CDKL5O76039 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC25.09■■□□□ 1.61
CDKL5O76039 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CDKL5O76039 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
CDKL5O76039 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC25.09■■□□□ 1.61
CDKL5O76039 AC099791.1-201ENST00000416440 715 ntBASIC25.09■■□□□ 1.61
CDKL5O76039 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms