Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
PTCD1O75127 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
PTCD1O75127 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
PTCD1O75127 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC27.93■■■□□ 2.06
PTCD1O75127 AC142086.2-201ENST00000569753 217 ntBASIC27.93■■■□□ 2.06
PTCD1O75127 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC27.93■■■□□ 2.06
PTCD1O75127 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC27.93■■■□□ 2.06
PTCD1O75127 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
PTCD1O75127 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC27.93■■■□□ 2.06
PTCD1O75127 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC27.93■■■□□ 2.06
PTCD1O75127 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PTCD1O75127 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
PTCD1O75127 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
PTCD1O75127 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
PTCD1O75127 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
PTCD1O75127 AC007322.1-201ENST00000426983 750 ntBASIC27.92■■■□□ 2.06
PTCD1O75127 TSPY6P-201ENST00000448518 926 ntBASIC27.92■■■□□ 2.06
PTCD1O75127 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
PTCD1O75127 AC005181.1-201ENST00000604782 1256 ntBASIC27.92■■■□□ 2.06
PTCD1O75127 AC231657.2-201ENST00000624556 255 ntBASIC27.92■■■□□ 2.06
PTCD1O75127 MFF-207ENST00000409565 1548 ntTSL 2 BASIC27.92■■■□□ 2.06
PTCD1O75127 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
PTCD1O75127 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PTCD1O75127 AC055733.4-201ENST00000638462 1354 ntBASIC27.91■■■□□ 2.06
PTCD1O75127 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PTCD1O75127 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PTCD1O75127 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC27.91■■■□□ 2.06
PTCD1O75127 CD99P1-205ENST00000527459 561 ntBASIC27.91■■■□□ 2.06
PTCD1O75127 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC27.91■■■□□ 2.06
PTCD1O75127 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC27.91■■■□□ 2.06
PTCD1O75127 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PTCD1O75127 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PTCD1O75127 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC27.91■■■□□ 2.06
PTCD1O75127 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PTCD1O75127 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC27.91■■■□□ 2.06
PTCD1O75127 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
PTCD1O75127 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC27.91■■■□□ 2.06
PTCD1O75127 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
PTCD1O75127 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
PTCD1O75127 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC27.9■■■□□ 2.06
PTCD1O75127 GUSBP6-202ENST00000438529 1198 ntBASIC27.9■■■□□ 2.06
PTCD1O75127 SERP1-208ENST00000491660 830 ntTSL 2 BASIC27.9■■■□□ 2.06
PTCD1O75127 BRI3-207ENST00000539286 699 ntTSL 2 BASIC27.9■■■□□ 2.06
PTCD1O75127 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC27.9■■■□□ 2.06
PTCD1O75127 MYCNOS-205ENST00000641950 531 ntBASIC27.9■■■□□ 2.06
PTCD1O75127 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
PTCD1O75127 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC27.89■■■□□ 2.06
PTCD1O75127 METTL15-202ENST00000403099 795 ntTSL 5 BASIC27.89■■■□□ 2.06
PTCD1O75127 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC27.89■■■□□ 2.06
PTCD1O75127 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC27.89■■■□□ 2.06
PTCD1O75127 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC27.89■■■□□ 2.06
PTCD1O75127 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
PTCD1O75127 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
PTCD1O75127 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC27.88■■■□□ 2.05
PTCD1O75127 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
PTCD1O75127 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC27.88■■■□□ 2.05
PTCD1O75127 SLC7A5P2-201ENST00000553010 536 ntBASIC27.88■■■□□ 2.05
PTCD1O75127 AL138781.1-201ENST00000566567 1274 ntBASIC27.88■■■□□ 2.05
PTCD1O75127 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.88■■■□□ 2.05
PTCD1O75127 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC27.88■■■□□ 2.05
PTCD1O75127 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
PTCD1O75127 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC27.88■■■□□ 2.05
PTCD1O75127 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC27.88■■■□□ 2.05
PTCD1O75127 THRA-202ENST00000394121 2260 ntTSL 2 BASIC27.87■■■□□ 2.05
PTCD1O75127 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
PTCD1O75127 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC27.87■■■□□ 2.05
PTCD1O75127 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC27.87■■■□□ 2.05
PTCD1O75127 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC27.87■■■□□ 2.05
PTCD1O75127 LINC01960-201ENST00000563759 1884 ntBASIC27.87■■■□□ 2.05
PTCD1O75127 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
PTCD1O75127 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC27.86■■■□□ 2.05
PTCD1O75127 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC27.86■■■□□ 2.05
PTCD1O75127 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC27.86■■■□□ 2.05
PTCD1O75127 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
PTCD1O75127 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC27.86■■■□□ 2.05
PTCD1O75127 TFG-210ENST00000620299 1289 ntTSL 5 BASIC27.86■■■□□ 2.05
PTCD1O75127 TMEM191A-211ENST00000637163 1067 ntBASIC27.86■■■□□ 2.05
PTCD1O75127 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC27.86■■■□□ 2.05
PTCD1O75127 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
PTCD1O75127 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC27.86■■■□□ 2.05
PTCD1O75127 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC27.86■■■□□ 2.05
PTCD1O75127 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
PTCD1O75127 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
PTCD1O75127 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
PTCD1O75127 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC27.85■■■□□ 2.05
PTCD1O75127 AC092068.2-201ENST00000590491 1708 ntBASIC27.85■■■□□ 2.05
PTCD1O75127 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
PTCD1O75127 TSPY20P-201ENST00000450910 630 ntBASIC27.85■■■□□ 2.05
PTCD1O75127 AC079089.2-201ENST00000531211 1277 ntBASIC27.85■■■□□ 2.05
PTCD1O75127 KLF13-207ENST00000560473 489 ntTSL 3 BASIC27.85■■■□□ 2.05
PTCD1O75127 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC27.85■■■□□ 2.05
PTCD1O75127 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.85■■■□□ 2.05
PTCD1O75127 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
PTCD1O75127 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC27.85■■■□□ 2.05
PTCD1O75127 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC27.84■■■□□ 2.05
PTCD1O75127 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
PTCD1O75127 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
PTCD1O75127 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC27.84■■■□□ 2.05
PTCD1O75127 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.84■■■□□ 2.05
PTCD1O75127 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms