Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL161729.1-201ENST00000604104 1402 ntBASIC17.09■□□□□ 0.33
COL6A5A8TX70 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A5A8TX70 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A5A8TX70 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A5A8TX70 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A5A8TX70 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A5A8TX70 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A5A8TX70 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A5A8TX70 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.09■□□□□ 0.33
COL6A5A8TX70 AC005224.4-201ENST00000583262 1652 ntBASIC17.08■□□□□ 0.33
COL6A5A8TX70 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.08■□□□□ 0.33
COL6A5A8TX70 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A5A8TX70 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.08■□□□□ 0.33
COL6A5A8TX70 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.08■□□□□ 0.33
COL6A5A8TX70 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC17.08■□□□□ 0.33
COL6A5A8TX70 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A5A8TX70 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A5A8TX70 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
COL6A5A8TX70 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A5A8TX70 POU5F1P4-201ENST00000413175 1085 ntBASIC17.08■□□□□ 0.32
COL6A5A8TX70 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A5A8TX70 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.08■□□□□ 0.32
COL6A5A8TX70 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A5A8TX70 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A5A8TX70 C2orf69P4-201ENST00000565394 541 ntBASIC17.08■□□□□ 0.32
COL6A5A8TX70 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A5A8TX70 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A5A8TX70 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A5A8TX70 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A5A8TX70 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A5A8TX70 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
COL6A5A8TX70 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A5A8TX70 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A5A8TX70 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A5A8TX70 AC093787.1-201ENST00000450396 207 ntBASIC17.07■□□□□ 0.32
COL6A5A8TX70 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A5A8TX70 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A5A8TX70 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A5A8TX70 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A5A8TX70 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL6A5A8TX70 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A5A8TX70 MIR6089-201ENST00000616698 64 ntBASIC17.07■□□□□ 0.32
COL6A5A8TX70 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A5A8TX70 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A5A8TX70 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A5A8TX70 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
COL6A5A8TX70 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A5A8TX70 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A5A8TX70 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A5A8TX70 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A5A8TX70 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.06■□□□□ 0.32
COL6A5A8TX70 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.06■□□□□ 0.32
COL6A5A8TX70 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
COL6A5A8TX70 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.06■□□□□ 0.32
COL6A5A8TX70 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A5A8TX70 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A5A8TX70 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 AC144652.1-201ENST00000609974 1624 ntBASIC17.05■□□□□ 0.32
COL6A5A8TX70 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A5A8TX70 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A5A8TX70 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A5A8TX70 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL6A5A8TX70 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A5A8TX70 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.04■□□□□ 0.32
COL6A5A8TX70 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A5A8TX70 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A5A8TX70 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A5A8TX70 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A5A8TX70 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A5A8TX70 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A5A8TX70 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A5A8TX70 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A5A8TX70 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A5A8TX70 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A5A8TX70 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A5A8TX70 AC135731.1-201ENST00000569415 2548 ntBASIC17.04■□□□□ 0.32
COL6A5A8TX70 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL6A5A8TX70 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A5A8TX70 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A5A8TX70 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.03■□□□□ 0.32
COL6A5A8TX70 AC133561.5-201ENST00000635547 218 ntBASIC17.03■□□□□ 0.32
COL6A5A8TX70 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A5A8TX70 AC010141.2-201ENST00000452426 721 ntBASIC17.03■□□□□ 0.32
COL6A5A8TX70 TERF1P5-201ENST00000477545 1207 ntBASIC17.03■□□□□ 0.32
COL6A5A8TX70 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
COL6A5A8TX70 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A5A8TX70 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A5A8TX70 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.02■□□□□ 0.32
COL6A5A8TX70 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.02■□□□□ 0.32
COL6A5A8TX70 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.02■□□□□ 0.32
COL6A5A8TX70 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A5A8TX70 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
COL6A5A8TX70 CYP2T3P-201ENST00000601990 817 ntBASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms