Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A6A6NMZ7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 KRT18P20-201ENST00000548986 1279 ntBASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A6A6NMZ7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 OR10C1-204ENST00000622521 1039 ntBASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A6A6NMZ7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 BX276092.2-201ENST00000417668 665 ntBASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A6A6NMZ7 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 AC073648.6-201ENST00000641589 218 ntBASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 AC010141.2-201ENST00000452426 721 ntBASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A6A6NMZ7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A6A6NMZ7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL6A6A6NMZ7 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A6A6NMZ7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.66■□□□□ 0.74
COL6A6A6NMZ7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.66■□□□□ 0.74
COL6A6A6NMZ7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A6A6NMZ7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A6A6NMZ7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 AC097658.1-201ENST00000475555 843 ntBASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL6A6A6NMZ7 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL6A6A6NMZ7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.64■□□□□ 0.74
COL6A6A6NMZ7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
COL6A6A6NMZ7 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.64■□□□□ 0.74
COL6A6A6NMZ7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.64■□□□□ 0.74
COL6A6A6NMZ7 AC138907.5-202ENST00000569484 235 ntBASIC19.64■□□□□ 0.74
COL6A6A6NMZ7 AC008694.1-202ENST00000636953 945 ntBASIC19.64■□□□□ 0.74
COL6A6A6NMZ7 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.64■□□□□ 0.73
COL6A6A6NMZ7 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms