Protein–RNA interactions for Protein: Q9UPN3

MACF1, Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5, humanhuman

Known RBP Predictions only

Length 7,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MACF1Q9UPN3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
MACF1Q9UPN3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC11.92□□□□□ -0.5
MACF1Q9UPN3 AL133380.1-201ENST00000506013 324 ntBASIC11.92□□□□□ -0.5
MACF1Q9UPN3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC11.92□□□□□ -0.5
MACF1Q9UPN3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC11.92□□□□□ -0.5
MACF1Q9UPN3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC11.91□□□□□ -0.5
MACF1Q9UPN3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
MACF1Q9UPN3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
MACF1Q9UPN3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
MACF1Q9UPN3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
MACF1Q9UPN3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
MACF1Q9UPN3 AC021231.2-201ENST00000594613 730 ntBASIC11.9□□□□□ -0.5
MACF1Q9UPN3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
MACF1Q9UPN3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
MACF1Q9UPN3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
MACF1Q9UPN3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
MACF1Q9UPN3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
MACF1Q9UPN3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC11.87□□□□□ -0.51
MACF1Q9UPN3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
MACF1Q9UPN3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
MACF1Q9UPN3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC11.86□□□□□ -0.51
MACF1Q9UPN3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC11.86□□□□□ -0.51
MACF1Q9UPN3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC11.85□□□□□ -0.51
MACF1Q9UPN3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
MACF1Q9UPN3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
MACF1Q9UPN3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
MACF1Q9UPN3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
MACF1Q9UPN3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
MACF1Q9UPN3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
MACF1Q9UPN3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
MACF1Q9UPN3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
MACF1Q9UPN3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
MACF1Q9UPN3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
MACF1Q9UPN3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
MACF1Q9UPN3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
MACF1Q9UPN3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
MACF1Q9UPN3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
MACF1Q9UPN3 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC11.81□□□□□ -0.52
MACF1Q9UPN3 RNF126P1-201ENST00000567452 1320 ntBASIC11.8□□□□□ -0.52
MACF1Q9UPN3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
MACF1Q9UPN3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
MACF1Q9UPN3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
MACF1Q9UPN3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
MACF1Q9UPN3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
MACF1Q9UPN3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
MACF1Q9UPN3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC11.79□□□□□ -0.52
MACF1Q9UPN3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
MACF1Q9UPN3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
MACF1Q9UPN3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
MACF1Q9UPN3 DUX4L29-201ENST00000425409 679 ntBASIC11.79□□□□□ -0.52
MACF1Q9UPN3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC11.78□□□□□ -0.52
MACF1Q9UPN3 AL033527.3-201ENST00000566366 1196 ntBASIC11.78□□□□□ -0.52
MACF1Q9UPN3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
MACF1Q9UPN3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
MACF1Q9UPN3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC11.76□□□□□ -0.53
MACF1Q9UPN3 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC11.76□□□□□ -0.53
MACF1Q9UPN3 AC012354.3-201ENST00000623734 483 ntBASIC11.76□□□□□ -0.53
MACF1Q9UPN3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
MACF1Q9UPN3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
MACF1Q9UPN3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
MACF1Q9UPN3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC11.74□□□□□ -0.53
MACF1Q9UPN3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC11.74□□□□□ -0.53
MACF1Q9UPN3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC11.74□□□□□ -0.53
MACF1Q9UPN3 DUX4L11-201ENST00000611504 1267 ntBASIC11.73□□□□□ -0.53
MACF1Q9UPN3 DUX4L12-201ENST00000614593 1267 ntBASIC11.73□□□□□ -0.53
MACF1Q9UPN3 DUX4L14-201ENST00000621227 1267 ntBASIC11.73□□□□□ -0.53
MACF1Q9UPN3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
MACF1Q9UPN3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC11.73□□□□□ -0.53
MACF1Q9UPN3 AC145285.7-201ENST00000614819 1539 ntBASIC11.73□□□□□ -0.53
MACF1Q9UPN3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC11.73□□□□□ -0.53
MACF1Q9UPN3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC11.73□□□□□ -0.53
MACF1Q9UPN3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
MACF1Q9UPN3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
MACF1Q9UPN3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
MACF1Q9UPN3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
MACF1Q9UPN3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
MACF1Q9UPN3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
MACF1Q9UPN3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC11.71□□□□□ -0.54
MACF1Q9UPN3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
MACF1Q9UPN3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC11.7□□□□□ -0.54
MACF1Q9UPN3 MVK-208ENST00000539696 608 ntTSL 5 BASIC11.7□□□□□ -0.54
MACF1Q9UPN3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
MACF1Q9UPN3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
MACF1Q9UPN3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC11.69□□□□□ -0.54
MACF1Q9UPN3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC11.69□□□□□ -0.54
MACF1Q9UPN3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
MACF1Q9UPN3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC11.68□□□□□ -0.54
MACF1Q9UPN3 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
MACF1Q9UPN3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
MACF1Q9UPN3 AL035685.1-201ENST00000636663 812 ntBASIC11.68□□□□□ -0.54
MACF1Q9UPN3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
MACF1Q9UPN3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
MACF1Q9UPN3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
MACF1Q9UPN3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC11.67□□□□□ -0.54
MACF1Q9UPN3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
MACF1Q9UPN3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC11.67□□□□□ -0.54
MACF1Q9UPN3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC11.66□□□□□ -0.54
MACF1Q9UPN3 AC008813.1-201ENST00000536597 885 ntBASIC11.66□□□□□ -0.54
MACF1Q9UPN3 NTF6A-201ENST00000591175 560 ntBASIC11.66□□□□□ -0.54
MACF1Q9UPN3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms