Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SMKR1H3BMG3 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC19.87■□□□□ 0.77
SMKR1H3BMG3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SMKR1H3BMG3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMKR1H3BMG3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SMKR1H3BMG3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMKR1H3BMG3 AL161658.1-201ENST00000623641 1967 ntBASIC19.85■□□□□ 0.77
SMKR1H3BMG3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SMKR1H3BMG3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SMKR1H3BMG3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC19.83■□□□□ 0.76
SMKR1H3BMG3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMKR1H3BMG3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMKR1H3BMG3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMKR1H3BMG3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SMKR1H3BMG3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMKR1H3BMG3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMKR1H3BMG3 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMKR1H3BMG3 AC015813.7-201ENST00000623294 581 ntBASIC19.79■□□□□ 0.76
SMKR1H3BMG3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMKR1H3BMG3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMKR1H3BMG3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SMKR1H3BMG3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMKR1H3BMG3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMKR1H3BMG3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMKR1H3BMG3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SMKR1H3BMG3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMKR1H3BMG3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SMKR1H3BMG3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMKR1H3BMG3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMKR1H3BMG3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMKR1H3BMG3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMKR1H3BMG3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMKR1H3BMG3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMKR1H3BMG3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMKR1H3BMG3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.7■□□□□ 0.74
SMKR1H3BMG3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMKR1H3BMG3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMKR1H3BMG3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMKR1H3BMG3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMKR1H3BMG3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
SMKR1H3BMG3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC19.65■□□□□ 0.74
SMKR1H3BMG3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.65■□□□□ 0.74
SMKR1H3BMG3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMKR1H3BMG3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMKR1H3BMG3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SMKR1H3BMG3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
SMKR1H3BMG3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMKR1H3BMG3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMKR1H3BMG3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMKR1H3BMG3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMKR1H3BMG3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC19.61■□□□□ 0.73
SMKR1H3BMG3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMKR1H3BMG3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMKR1H3BMG3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SMKR1H3BMG3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMKR1H3BMG3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMKR1H3BMG3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMKR1H3BMG3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMKR1H3BMG3 ST7-AS1-201ENST00000456775 1889 ntBASIC19.58■□□□□ 0.72
SMKR1H3BMG3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.58■□□□□ 0.72
SMKR1H3BMG3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
SMKR1H3BMG3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.57■□□□□ 0.72
SMKR1H3BMG3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMKR1H3BMG3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMKR1H3BMG3 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMKR1H3BMG3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMKR1H3BMG3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SMKR1H3BMG3 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMKR1H3BMG3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SMKR1H3BMG3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMKR1H3BMG3 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
SMKR1H3BMG3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMKR1H3BMG3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SMKR1H3BMG3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMKR1H3BMG3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
SMKR1H3BMG3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.44■□□□□ 0.7
SMKR1H3BMG3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms