Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
TCRBV3S1A0A5B6 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.69■■□□□ 1.7
TCRBV3S1A0A5B6 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC25.69■■□□□ 1.7
TCRBV3S1A0A5B6 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.68■■□□□ 1.7
TCRBV3S1A0A5B6 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TCRBV3S1A0A5B6 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
TCRBV3S1A0A5B6 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.68■■□□□ 1.7
TCRBV3S1A0A5B6 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
TCRBV3S1A0A5B6 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
TCRBV3S1A0A5B6 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.66■■□□□ 1.7
TCRBV3S1A0A5B6 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
TCRBV3S1A0A5B6 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
TCRBV3S1A0A5B6 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
TCRBV3S1A0A5B6 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
TCRBV3S1A0A5B6 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
TCRBV3S1A0A5B6 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TCRBV3S1A0A5B6 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TCRBV3S1A0A5B6 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
TCRBV3S1A0A5B6 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TCRBV3S1A0A5B6 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TCRBV3S1A0A5B6 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.6■■□□□ 1.69
TCRBV3S1A0A5B6 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
TCRBV3S1A0A5B6 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TCRBV3S1A0A5B6 ST7-AS1-201ENST00000456775 1889 ntBASIC25.55■■□□□ 1.68
TCRBV3S1A0A5B6 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TCRBV3S1A0A5B6 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TCRBV3S1A0A5B6 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TCRBV3S1A0A5B6 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TCRBV3S1A0A5B6 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.53■■□□□ 1.68
TCRBV3S1A0A5B6 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
TCRBV3S1A0A5B6 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.52■■□□□ 1.68
TCRBV3S1A0A5B6 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TCRBV3S1A0A5B6 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.52■■□□□ 1.68
TCRBV3S1A0A5B6 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC25.5■■□□□ 1.67
TCRBV3S1A0A5B6 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TCRBV3S1A0A5B6 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TCRBV3S1A0A5B6 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TCRBV3S1A0A5B6 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
TCRBV3S1A0A5B6 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.46■■□□□ 1.67
TCRBV3S1A0A5B6 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
TCRBV3S1A0A5B6 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
TCRBV3S1A0A5B6 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.45■■□□□ 1.66
TCRBV3S1A0A5B6 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.44■■□□□ 1.66
TCRBV3S1A0A5B6 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
TCRBV3S1A0A5B6 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.43■■□□□ 1.66
TCRBV3S1A0A5B6 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
TCRBV3S1A0A5B6 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
TCRBV3S1A0A5B6 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
TCRBV3S1A0A5B6 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
TCRBV3S1A0A5B6 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
TCRBV3S1A0A5B6 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
TCRBV3S1A0A5B6 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
TCRBV3S1A0A5B6 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
TCRBV3S1A0A5B6 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.38■■□□□ 1.65
TCRBV3S1A0A5B6 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
TCRBV3S1A0A5B6 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TCRBV3S1A0A5B6 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TCRBV3S1A0A5B6 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.36■■□□□ 1.65
TCRBV3S1A0A5B6 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
TCRBV3S1A0A5B6 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
TCRBV3S1A0A5B6 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC25.36■■□□□ 1.65
TCRBV3S1A0A5B6 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TCRBV3S1A0A5B6 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
TCRBV3S1A0A5B6 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TCRBV3S1A0A5B6 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TCRBV3S1A0A5B6 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
TCRBV3S1A0A5B6 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TCRBV3S1A0A5B6 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.33■■□□□ 1.65
TCRBV3S1A0A5B6 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
TCRBV3S1A0A5B6 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.33■■□□□ 1.65
TCRBV3S1A0A5B6 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
TCRBV3S1A0A5B6 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TCRBV3S1A0A5B6 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
TCRBV3S1A0A5B6 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.32■■□□□ 1.64
TCRBV3S1A0A5B6 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
TCRBV3S1A0A5B6 AC142086.6-201ENST00000621154 1765 ntBASIC25.31■■□□□ 1.64
TCRBV3S1A0A5B6 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
TCRBV3S1A0A5B6 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
TCRBV3S1A0A5B6 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.3■■□□□ 1.64
TCRBV3S1A0A5B6 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
TCRBV3S1A0A5B6 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.29■■□□□ 1.64
TCRBV3S1A0A5B6 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TCRBV3S1A0A5B6 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC25.29■■□□□ 1.64
TCRBV3S1A0A5B6 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TCRBV3S1A0A5B6 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TCRBV3S1A0A5B6 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
TCRBV3S1A0A5B6 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
TCRBV3S1A0A5B6 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
TCRBV3S1A0A5B6 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.26■■□□□ 1.63
TCRBV3S1A0A5B6 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
TCRBV3S1A0A5B6 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
TCRBV3S1A0A5B6 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
TCRBV3S1A0A5B6 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
TCRBV3S1A0A5B6 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
TCRBV3S1A0A5B6 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TCRBV3S1A0A5B6 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TCRBV3S1A0A5B6 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.21■■□□□ 1.63
TCRBV3S1A0A5B6 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.21■■□□□ 1.63
TCRBV3S1A0A5B6 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
TCRBV3S1A0A5B6 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms