Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 AC231657.2-201ENST00000624556 255 ntBASIC19.71■□□□□ 0.75
SHANK1Q9Y566 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 AC004687.1-201ENST00000579003 1625 ntBASIC19.71■□□□□ 0.75
SHANK1Q9Y566 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 UBE2DNL-204ENST00000602536 740 ntBASIC19.71■□□□□ 0.75
SHANK1Q9Y566 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK1Q9Y566 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK1Q9Y566 SLC29A4P1-201ENST00000398760 971 ntBASIC19.7■□□□□ 0.74
SHANK1Q9Y566 AC083906.2-201ENST00000511578 360 ntBASIC19.7■□□□□ 0.74
SHANK1Q9Y566 AF201337.1-201ENST00000520239 748 ntBASIC19.7■□□□□ 0.74
SHANK1Q9Y566 AC008687.6-201ENST00000596318 630 ntBASIC19.7■□□□□ 0.74
SHANK1Q9Y566 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHANK1Q9Y566 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK1Q9Y566 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK1Q9Y566 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK1Q9Y566 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK1Q9Y566 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHANK1Q9Y566 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 AP003733.4-201ENST00000623785 1697 ntBASIC19.69■□□□□ 0.74
SHANK1Q9Y566 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK1Q9Y566 AC133561.1-201ENST00000568600 2415 ntBASIC19.69■□□□□ 0.74
SHANK1Q9Y566 AC073210.2-201ENST00000430369 194 ntBASIC19.68■□□□□ 0.74
SHANK1Q9Y566 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 KRT87P-202ENST00000534226 1464 ntBASIC19.68■□□□□ 0.74
SHANK1Q9Y566 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK1Q9Y566 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 AC068587.7-201ENST00000641602 218 ntBASIC19.67■□□□□ 0.74
SHANK1Q9Y566 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.67■□□□□ 0.74
SHANK1Q9Y566 AC079630.1-202ENST00000618127 1840 ntBASIC19.67■□□□□ 0.74
SHANK1Q9Y566 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.66■□□□□ 0.74
SHANK1Q9Y566 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 AC079140.4-201ENST00000507448 529 ntBASIC19.65■□□□□ 0.74
SHANK1Q9Y566 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 MYCNOS-205ENST00000641950 531 ntBASIC19.65■□□□□ 0.74
SHANK1Q9Y566 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms