Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 AC025884.2-201ENST00000553429 711 ntBASIC20.46■□□□□ 0.87
LRRC42Q9Y546 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.46■□□□□ 0.87
LRRC42Q9Y546 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC42Q9Y546 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 DUX4L11-201ENST00000611504 1267 ntBASIC20.44■□□□□ 0.86
LRRC42Q9Y546 DUX4L12-201ENST00000614593 1267 ntBASIC20.44■□□□□ 0.86
LRRC42Q9Y546 DUX4L14-201ENST00000621227 1267 ntBASIC20.44■□□□□ 0.86
LRRC42Q9Y546 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.44■□□□□ 0.86
LRRC42Q9Y546 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 BX323043.1-201ENST00000641006 1765 ntBASIC20.43■□□□□ 0.86
LRRC42Q9Y546 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
LRRC42Q9Y546 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LRRC42Q9Y546 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 AC018445.3-201ENST00000624177 1945 ntBASIC20.41■□□□□ 0.86
LRRC42Q9Y546 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 KRT18P10-201ENST00000388836 1287 ntBASIC20.41■□□□□ 0.86
LRRC42Q9Y546 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LRRC42Q9Y546 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LRRC42Q9Y546 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
LRRC42Q9Y546 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LRRC42Q9Y546 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms