Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIME1Q9H400 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.05■□□□□ 0.64
LIME1Q9H400 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIME1Q9H400 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIME1Q9H400 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.05■□□□□ 0.64
LIME1Q9H400 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.05■□□□□ 0.64
LIME1Q9H400 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.05■□□□□ 0.64
LIME1Q9H400 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIME1Q9H400 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.05■□□□□ 0.64
LIME1Q9H400 AC104771.1-201ENST00000603335 964 ntBASIC19.05■□□□□ 0.64
LIME1Q9H400 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.05■□□□□ 0.64
LIME1Q9H400 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.05■□□□□ 0.64
LIME1Q9H400 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.05■□□□□ 0.64
LIME1Q9H400 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIME1Q9H400 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIME1Q9H400 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIME1Q9H400 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
LIME1Q9H400 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIME1Q9H400 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.04■□□□□ 0.64
LIME1Q9H400 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIME1Q9H400 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIME1Q9H400 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.04■□□□□ 0.64
LIME1Q9H400 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIME1Q9H400 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.04■□□□□ 0.64
LIME1Q9H400 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.04■□□□□ 0.64
LIME1Q9H400 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIME1Q9H400 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.04■□□□□ 0.64
LIME1Q9H400 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIME1Q9H400 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIME1Q9H400 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LIME1Q9H400 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIME1Q9H400 AL161729.1-201ENST00000604104 1402 ntBASIC19.03■□□□□ 0.64
LIME1Q9H400 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIME1Q9H400 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
LIME1Q9H400 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.03■□□□□ 0.64
LIME1Q9H400 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIME1Q9H400 OR2I1P-207ENST00000453522 948 ntBASIC19.03■□□□□ 0.64
LIME1Q9H400 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIME1Q9H400 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.03■□□□□ 0.64
LIME1Q9H400 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.03■□□□□ 0.64
LIME1Q9H400 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.03■□□□□ 0.64
LIME1Q9H400 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
LIME1Q9H400 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIME1Q9H400 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIME1Q9H400 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIME1Q9H400 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.02■□□□□ 0.64
LIME1Q9H400 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIME1Q9H400 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIME1Q9H400 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
LIME1Q9H400 AL355802.2-201ENST00000402069 882 ntBASIC19.02■□□□□ 0.64
LIME1Q9H400 AC026185.1-201ENST00000445748 174 ntBASIC19.02■□□□□ 0.64
LIME1Q9H400 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.02■□□□□ 0.64
LIME1Q9H400 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.02■□□□□ 0.64
LIME1Q9H400 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.02■□□□□ 0.64
LIME1Q9H400 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.02■□□□□ 0.64
LIME1Q9H400 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIME1Q9H400 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIME1Q9H400 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.02■□□□□ 0.63
LIME1Q9H400 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
LIME1Q9H400 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.01■□□□□ 0.63
LIME1Q9H400 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.01■□□□□ 0.63
LIME1Q9H400 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.01■□□□□ 0.63
LIME1Q9H400 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.01■□□□□ 0.63
LIME1Q9H400 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
LIME1Q9H400 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.01■□□□□ 0.63
LIME1Q9H400 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIME1Q9H400 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19■□□□□ 0.63
LIME1Q9H400 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19■□□□□ 0.63
LIME1Q9H400 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19■□□□□ 0.63
LIME1Q9H400 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19■□□□□ 0.63
LIME1Q9H400 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
LIME1Q9H400 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
LIME1Q9H400 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
LIME1Q9H400 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIME1Q9H400 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19■□□□□ 0.63
LIME1Q9H400 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIME1Q9H400 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIME1Q9H400 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LIME1Q9H400 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.99■□□□□ 0.63
LIME1Q9H400 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIME1Q9H400 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIME1Q9H400 LINC00565-201ENST00000562710 2331 ntBASIC18.99■□□□□ 0.63
LIME1Q9H400 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIME1Q9H400 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms