Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.11■■□□□ 1.29
CDX2Q99626 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CDX2Q99626 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CDX2Q99626 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CDX2Q99626 AP003097.1-201ENST00000530657 1135 ntBASIC23.11■■□□□ 1.29
CDX2Q99626 KRT18P20-201ENST00000548986 1279 ntBASIC23.11■■□□□ 1.29
CDX2Q99626 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CDX2Q99626 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.11■■□□□ 1.29
CDX2Q99626 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
CDX2Q99626 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CDX2Q99626 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CDX2Q99626 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
CDX2Q99626 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.1■■□□□ 1.29
CDX2Q99626 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.1■■□□□ 1.29
CDX2Q99626 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.1■■□□□ 1.29
CDX2Q99626 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CDX2Q99626 MFF-207ENST00000409565 1548 ntTSL 2 BASIC23.09■■□□□ 1.29
CDX2Q99626 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CDX2Q99626 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CDX2Q99626 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CDX2Q99626 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.09■■□□□ 1.29
CDX2Q99626 SNORA78-201ENST00000459373 127 ntBASIC23.09■■□□□ 1.29
CDX2Q99626 AC069236.1-201ENST00000604339 616 ntBASIC23.09■■□□□ 1.29
CDX2Q99626 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CDX2Q99626 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
CDX2Q99626 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.08■■□□□ 1.29
CDX2Q99626 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.08■■□□□ 1.29
CDX2Q99626 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.08■■□□□ 1.29
CDX2Q99626 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.08■■□□□ 1.29
CDX2Q99626 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDX2Q99626 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
CDX2Q99626 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
CDX2Q99626 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.07■■□□□ 1.28
CDX2Q99626 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CDX2Q99626 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
CDX2Q99626 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC23.07■■□□□ 1.28
CDX2Q99626 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CDX2Q99626 AC010141.2-201ENST00000452426 721 ntBASIC23.07■■□□□ 1.28
CDX2Q99626 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CDX2Q99626 Z99916.2-201ENST00000604037 246 ntBASIC23.07■■□□□ 1.28
CDX2Q99626 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
CDX2Q99626 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.07■■□□□ 1.28
CDX2Q99626 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDX2Q99626 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
CDX2Q99626 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
CDX2Q99626 AC007322.4-201ENST00000509611 723 ntBASIC23.06■■□□□ 1.28
CDX2Q99626 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
CDX2Q99626 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDX2Q99626 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC23.06■■□□□ 1.28
CDX2Q99626 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.06■■□□□ 1.28
CDX2Q99626 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDX2Q99626 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDX2Q99626 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDX2Q99626 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDX2Q99626 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.05■■□□□ 1.28
CDX2Q99626 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.05■■□□□ 1.28
CDX2Q99626 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDX2Q99626 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDX2Q99626 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDX2Q99626 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDX2Q99626 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
CDX2Q99626 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC23.05■■□□□ 1.28
CDX2Q99626 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC23.05■■□□□ 1.28
CDX2Q99626 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.05■■□□□ 1.28
CDX2Q99626 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.05■■□□□ 1.28
CDX2Q99626 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CDX2Q99626 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC23.05■■□□□ 1.28
CDX2Q99626 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.05■■□□□ 1.28
CDX2Q99626 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.05■■□□□ 1.28
CDX2Q99626 FAM197Y4-202ENST00000622692 608 ntBASIC23.05■■□□□ 1.28
CDX2Q99626 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDX2Q99626 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CDX2Q99626 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDX2Q99626 AC004687.1-201ENST00000579003 1625 ntBASIC23.04■■□□□ 1.28
CDX2Q99626 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDX2Q99626 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.04■■□□□ 1.28
CDX2Q99626 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDX2Q99626 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CDX2Q99626 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDX2Q99626 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.04■■□□□ 1.28
CDX2Q99626 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDX2Q99626 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.04■■□□□ 1.28
CDX2Q99626 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDX2Q99626 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.04■■□□□ 1.28
CDX2Q99626 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC23.04■■□□□ 1.28
CDX2Q99626 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.04■■□□□ 1.28
CDX2Q99626 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.04■■□□□ 1.28
CDX2Q99626 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDX2Q99626 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.04■■□□□ 1.28
CDX2Q99626 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC23.04■■□□□ 1.28
CDX2Q99626 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC23.04■■□□□ 1.28
CDX2Q99626 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms