Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 DUSP8P5-201ENST00000422884 1815 ntBASIC21.73■■□□□ 1.07
VPS13AQ96RL7 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 AC073912.3-201ENST00000624414 853 ntBASIC21.73■■□□□ 1.07
VPS13AQ96RL7 AC073648.6-201ENST00000641589 218 ntBASIC21.73■■□□□ 1.07
VPS13AQ96RL7 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.73■■□□□ 1.07
VPS13AQ96RL7 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS13AQ96RL7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13AQ96RL7 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 AC010536.3-201ENST00000620306 533 ntBASIC21.7■■□□□ 1.06
VPS13AQ96RL7 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13AQ96RL7 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 AC142381.4-202ENST00000563973 229 ntBASIC21.69■■□□□ 1.06
VPS13AQ96RL7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
VPS13AQ96RL7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS13AQ96RL7 LINC01023-201ENST00000606054 436 ntBASIC21.68■■□□□ 1.06
VPS13AQ96RL7 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 MYCNOS-205ENST00000641950 531 ntBASIC21.67■■□□□ 1.06
VPS13AQ96RL7 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 MIR4497-201ENST00000583208 89 ntBASIC21.67■■□□□ 1.06
VPS13AQ96RL7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS13AQ96RL7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 AC068338.2-201ENST00000563278 1430 ntBASIC21.66■■□□□ 1.06
VPS13AQ96RL7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 CYP2T1P-201ENST00000432607 1285 ntBASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms