Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 FP325331.1-202ENST00000623531 1380 ntBASIC21.5■■□□□ 1.03
CFAP54Q96N23 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CFAP54Q96N23 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CFAP54Q96N23 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 KRT18P35-201ENST00000510488 1269 ntBASIC21.49■■□□□ 1.03
CFAP54Q96N23 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CFAP54Q96N23 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CFAP54Q96N23 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CFAP54Q96N23 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.48■■□□□ 1.03
CFAP54Q96N23 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.48■■□□□ 1.03
CFAP54Q96N23 Z99916.2-201ENST00000604037 246 ntBASIC21.48■■□□□ 1.03
CFAP54Q96N23 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CFAP54Q96N23 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CFAP54Q96N23 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.48■■□□□ 1.03
CFAP54Q96N23 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.48■■□□□ 1.03
CFAP54Q96N23 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CFAP54Q96N23 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CFAP54Q96N23 MIPEPP3-201ENST00000412105 444 ntBASIC21.47■■□□□ 1.03
CFAP54Q96N23 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.47■■□□□ 1.03
CFAP54Q96N23 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.47■■□□□ 1.03
CFAP54Q96N23 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CFAP54Q96N23 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CFAP54Q96N23 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CFAP54Q96N23 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CFAP54Q96N23 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.47■■□□□ 1.03
CFAP54Q96N23 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CFAP54Q96N23 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.47■■□□□ 1.03
CFAP54Q96N23 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.47■■□□□ 1.03
CFAP54Q96N23 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CFAP54Q96N23 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.47■■□□□ 1.03
CFAP54Q96N23 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
CFAP54Q96N23 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CFAP54Q96N23 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CFAP54Q96N23 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CFAP54Q96N23 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CFAP54Q96N23 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CFAP54Q96N23 SNORA78-201ENST00000459373 127 ntBASIC21.46■■□□□ 1.03
CFAP54Q96N23 C2orf69P4-201ENST00000565394 541 ntBASIC21.46■■□□□ 1.03
CFAP54Q96N23 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CFAP54Q96N23 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CFAP54Q96N23 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.46■■□□□ 1.03
CFAP54Q96N23 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
CFAP54Q96N23 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 ARMC10P1-201ENST00000313754 855 ntBASIC21.45■■□□□ 1.02
CFAP54Q96N23 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CFAP54Q96N23 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CFAP54Q96N23 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
CFAP54Q96N23 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.45■■□□□ 1.02
CFAP54Q96N23 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.45■■□□□ 1.02
CFAP54Q96N23 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.45■■□□□ 1.02
CFAP54Q96N23 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CFAP54Q96N23 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CFAP54Q96N23 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.45■■□□□ 1.02
CFAP54Q96N23 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms