Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.5■■□□□ 1.03
PTCD3Q96EY7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.5■■□□□ 1.03
PTCD3Q96EY7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PTCD3Q96EY7 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PTCD3Q96EY7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.49■■□□□ 1.03
PTCD3Q96EY7 C17orf82-201ENST00000623772 1530 ntBASIC21.49■■□□□ 1.03
PTCD3Q96EY7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTCD3Q96EY7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 DUX4L4-201ENST00000566884 1269 ntBASIC21.47■■□□□ 1.03
PTCD3Q96EY7 AL356740.2-201ENST00000601559 647 ntBASIC21.47■■□□□ 1.03
PTCD3Q96EY7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 AL117332.1-201ENST00000622628 974 ntBASIC21.47■■□□□ 1.03
PTCD3Q96EY7 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCD3Q96EY7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCD3Q96EY7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
PTCD3Q96EY7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
PTCD3Q96EY7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
PTCD3Q96EY7 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 AL356441.2-201ENST00000443009 864 ntBASIC21.45■■□□□ 1.02
PTCD3Q96EY7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTCD3Q96EY7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 MIR3621-201ENST00000580529 85 ntBASIC21.44■■□□□ 1.02
PTCD3Q96EY7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCD3Q96EY7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCD3Q96EY7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.43■■□□□ 1.02
PTCD3Q96EY7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.43■■□□□ 1.02
PTCD3Q96EY7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PTCD3Q96EY7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.43■■□□□ 1.02
PTCD3Q96EY7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCD3Q96EY7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.43■■□□□ 1.02
PTCD3Q96EY7 AC092667.1-201ENST00000434301 2586 ntBASIC21.43■■□□□ 1.02
PTCD3Q96EY7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PTCD3Q96EY7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms