Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC126544.1-201ENST00000580842 1059 ntBASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 AC005837.3-201ENST00000612163 286 ntBASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UBE3DQ7Z6J8 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 RASA4CP-201ENST00000424092 1398 ntBASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
UBE3DQ7Z6J8 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 MIR638-201ENST00000385237 100 ntBASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 AC091305.1-201ENST00000479476 895 ntBASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 IGHV3-19-201ENST00000521488 291 ntBASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBE3DQ7Z6J8 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
UBE3DQ7Z6J8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.58■□□□□ 0.89
UBE3DQ7Z6J8 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UBE3DQ7Z6J8 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
UBE3DQ7Z6J8 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
UBE3DQ7Z6J8 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.58■□□□□ 0.89
UBE3DQ7Z6J8 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.58■□□□□ 0.89
UBE3DQ7Z6J8 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 OR7E47P-201ENST00000546390 1422 ntBASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
UBE3DQ7Z6J8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms