Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RPUSD3Q6P087 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RPUSD3Q6P087 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
RPUSD3Q6P087 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RPUSD3Q6P087 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RPUSD3Q6P087 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.83■□□□□ 0.76
RPUSD3Q6P087 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RPUSD3Q6P087 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RPUSD3Q6P087 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.83■□□□□ 0.76
RPUSD3Q6P087 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RPUSD3Q6P087 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RPUSD3Q6P087 AC133561.1-201ENST00000568600 2415 ntBASIC19.82■□□□□ 0.76
RPUSD3Q6P087 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
RPUSD3Q6P087 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RPUSD3Q6P087 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.82■□□□□ 0.76
RPUSD3Q6P087 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.82■□□□□ 0.76
RPUSD3Q6P087 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RPUSD3Q6P087 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 AC079140.4-201ENST00000507448 529 ntBASIC19.81■□□□□ 0.76
RPUSD3Q6P087 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
RPUSD3Q6P087 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.8■□□□□ 0.76
RPUSD3Q6P087 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RPUSD3Q6P087 AC004812.2-201ENST00000611079 2094 ntBASIC19.8■□□□□ 0.76
RPUSD3Q6P087 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.79■□□□□ 0.76
RPUSD3Q6P087 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RPUSD3Q6P087 AC009237.3-201ENST00000393279 1427 ntBASIC19.78■□□□□ 0.76
RPUSD3Q6P087 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RPUSD3Q6P087 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.77■□□□□ 0.76
RPUSD3Q6P087 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RPUSD3Q6P087 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RPUSD3Q6P087 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
RPUSD3Q6P087 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RPUSD3Q6P087 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.77■□□□□ 0.76
RPUSD3Q6P087 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.77■□□□□ 0.76
RPUSD3Q6P087 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.77■□□□□ 0.76
RPUSD3Q6P087 AC011767.1-201ENST00000617410 1153 ntBASIC19.77■□□□□ 0.76
RPUSD3Q6P087 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
RPUSD3Q6P087 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
RPUSD3Q6P087 ESRRAP2-201ENST00000418437 1549 ntBASIC19.76■□□□□ 0.75
RPUSD3Q6P087 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RPUSD3Q6P087 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RPUSD3Q6P087 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RPUSD3Q6P087 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RPUSD3Q6P087 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.76■□□□□ 0.75
RPUSD3Q6P087 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.76■□□□□ 0.75
RPUSD3Q6P087 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RPUSD3Q6P087 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms