Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM4P50479 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.38■□□□□ 0.53
PDLIM4P50479 AC016769.1-201ENST00000409132 1010 ntBASIC18.38■□□□□ 0.53
PDLIM4P50479 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.38■□□□□ 0.53
PDLIM4P50479 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.38■□□□□ 0.53
PDLIM4P50479 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.38■□□□□ 0.53
PDLIM4P50479 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.38■□□□□ 0.53
PDLIM4P50479 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.38■□□□□ 0.53
PDLIM4P50479 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.38■□□□□ 0.53
PDLIM4P50479 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.38■□□□□ 0.53
PDLIM4P50479 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM4P50479 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PDLIM4P50479 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PDLIM4P50479 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM4P50479 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM4P50479 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM4P50479 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM4P50479 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.37■□□□□ 0.53
PDLIM4P50479 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM4P50479 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.37■□□□□ 0.53
PDLIM4P50479 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM4P50479 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM4P50479 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.37■□□□□ 0.53
PDLIM4P50479 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.37■□□□□ 0.53
PDLIM4P50479 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM4P50479 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.37■□□□□ 0.53
PDLIM4P50479 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PDLIM4P50479 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PDLIM4P50479 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM4P50479 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM4P50479 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.36■□□□□ 0.53
PDLIM4P50479 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.36■□□□□ 0.53
PDLIM4P50479 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM4P50479 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.36■□□□□ 0.53
PDLIM4P50479 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.36■□□□□ 0.53
PDLIM4P50479 AC137761.2-201ENST00000561729 223 ntBASIC18.36■□□□□ 0.53
PDLIM4P50479 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.36■□□□□ 0.53
PDLIM4P50479 AC145350.3-201ENST00000569033 163 ntBASIC18.36■□□□□ 0.53
PDLIM4P50479 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PDLIM4P50479 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.36■□□□□ 0.53
PDLIM4P50479 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.36■□□□□ 0.53
PDLIM4P50479 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PDLIM4P50479 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PDLIM4P50479 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.35■□□□□ 0.53
PDLIM4P50479 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
PDLIM4P50479 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.35■□□□□ 0.53
PDLIM4P50479 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PDLIM4P50479 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PDLIM4P50479 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.35■□□□□ 0.53
PDLIM4P50479 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.34■□□□□ 0.53
PDLIM4P50479 OXCT2P1-201ENST00000447263 1535 ntBASIC18.34■□□□□ 0.53
PDLIM4P50479 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 ABCB10P4-201ENST00000566803 2184 ntBASIC18.34■□□□□ 0.53
PDLIM4P50479 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.34■□□□□ 0.53
PDLIM4P50479 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.34■□□□□ 0.53
PDLIM4P50479 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.34■□□□□ 0.53
PDLIM4P50479 SMUG1P1-201ENST00000590640 811 ntBASIC18.34■□□□□ 0.53
PDLIM4P50479 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.34■□□□□ 0.53
PDLIM4P50479 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
PDLIM4P50479 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PDLIM4P50479 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PDLIM4P50479 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PDLIM4P50479 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.33■□□□□ 0.52
PDLIM4P50479 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.33■□□□□ 0.52
PDLIM4P50479 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.33■□□□□ 0.52
PDLIM4P50479 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PDLIM4P50479 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.33■□□□□ 0.52
PDLIM4P50479 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
PDLIM4P50479 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PDLIM4P50479 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PDLIM4P50479 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PDLIM4P50479 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PDLIM4P50479 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PDLIM4P50479 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM4P50479 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM4P50479 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms