Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.05■□□□□ 0.96
PCNAP12004 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PCNAP12004 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.05■□□□□ 0.96
PCNAP12004 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCNAP12004 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.05■□□□□ 0.96
PCNAP12004 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCNAP12004 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCNAP12004 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
PCNAP12004 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
PCNAP12004 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.05■□□□□ 0.96
PCNAP12004 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PCNAP12004 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PCNAP12004 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.05■□□□□ 0.96
PCNAP12004 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PCNAP12004 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
PCNAP12004 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
PCNAP12004 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
PCNAP12004 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
PCNAP12004 SERBP1P1-201ENST00000396021 1160 ntBASIC21.04■□□□□ 0.96
PCNAP12004 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.04■□□□□ 0.96
PCNAP12004 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.04■□□□□ 0.96
PCNAP12004 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.04■□□□□ 0.96
PCNAP12004 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCNAP12004 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCNAP12004 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCNAP12004 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PCNAP12004 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCNAP12004 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCNAP12004 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCNAP12004 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PCNAP12004 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
PCNAP12004 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCNAP12004 DUX4L19-201ENST00000557448 1267 ntBASIC21.03■□□□□ 0.96
PCNAP12004 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.03■□□□□ 0.96
PCNAP12004 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PCNAP12004 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PCNAP12004 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PCNAP12004 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
PCNAP12004 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.02■□□□□ 0.96
PCNAP12004 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCNAP12004 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCNAP12004 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCNAP12004 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCNAP12004 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.02■□□□□ 0.96
PCNAP12004 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.02■□□□□ 0.96
PCNAP12004 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PCNAP12004 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.02■□□□□ 0.96
PCNAP12004 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.02■□□□□ 0.96
PCNAP12004 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCNAP12004 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
PCNAP12004 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCNAP12004 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PCNAP12004 AL137060.1-201ENST00000618151 2648 ntBASIC21.02■□□□□ 0.96
PCNAP12004 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PCNAP12004 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
PCNAP12004 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
PCNAP12004 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PCNAP12004 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.01■□□□□ 0.95
PCNAP12004 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.01■□□□□ 0.95
PCNAP12004 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
PCNAP12004 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
PCNAP12004 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PCNAP12004 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.01■□□□□ 0.95
PCNAP12004 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCNAP12004 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCNAP12004 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCNAP12004 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCNAP12004 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCNAP12004 AC139530.1-201ENST00000575312 1977 ntBASIC21■□□□□ 0.95
PCNAP12004 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21■□□□□ 0.95
PCNAP12004 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
PCNAP12004 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21■□□□□ 0.95
PCNAP12004 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCNAP12004 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCNAP12004 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.99■□□□□ 0.95
PCNAP12004 AC008406.3-201ENST00000620001 1374 ntBASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms