Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD4P09016 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HOXD4P09016 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD4P09016 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD4P09016 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.62■□□□□ 0.73
HOXD4P09016 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD4P09016 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXD4P09016 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD4P09016 DUSP8P5-201ENST00000422884 1815 ntBASIC19.62■□□□□ 0.73
HOXD4P09016 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXD4P09016 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HOXD4P09016 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXD4P09016 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXD4P09016 AL117328.2-201ENST00000624617 1940 ntBASIC19.61■□□□□ 0.73
HOXD4P09016 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXD4P09016 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXD4P09016 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXD4P09016 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HOXD4P09016 AC010141.3-201ENST00000456659 717 ntBASIC19.61■□□□□ 0.73
HOXD4P09016 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXD4P09016 NTF6G-201ENST00000591094 616 ntBASIC19.61■□□□□ 0.73
HOXD4P09016 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
HOXD4P09016 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXD4P09016 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXD4P09016 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXD4P09016 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.61■□□□□ 0.73
HOXD4P09016 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.61■□□□□ 0.73
HOXD4P09016 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HOXD4P09016 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.6■□□□□ 0.73
HOXD4P09016 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 AC004911.1-201ENST00000416316 871 ntBASIC19.6■□□□□ 0.73
HOXD4P09016 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.6■□□□□ 0.73
HOXD4P09016 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
HOXD4P09016 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 AC004687.1-201ENST00000579003 1625 ntBASIC19.6■□□□□ 0.73
HOXD4P09016 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXD4P09016 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXD4P09016 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXD4P09016 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXD4P09016 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HOXD4P09016 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
HOXD4P09016 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HOXD4P09016 AL353803.4-201ENST00000565882 1934 ntBASIC19.59■□□□□ 0.73
HOXD4P09016 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HOXD4P09016 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXD4P09016 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXD4P09016 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HOXD4P09016 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXD4P09016 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXD4P09016 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.59■□□□□ 0.73
HOXD4P09016 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXD4P09016 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXD4P09016 AC004812.2-201ENST00000611079 2094 ntBASIC19.59■□□□□ 0.73
HOXD4P09016 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXD4P09016 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXD4P09016 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXD4P09016 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXD4P09016 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXD4P09016 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HOXD4P09016 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HOXD4P09016 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXD4P09016 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXD4P09016 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXD4P09016 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXD4P09016 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXD4P09016 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.58■□□□□ 0.72
HOXD4P09016 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
HOXD4P09016 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXD4P09016 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXD4P09016 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXD4P09016 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 RNF165-205ENST00000588679 2904 ntBASIC19.57■□□□□ 0.72
HOXD4P09016 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
HOXD4P09016 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXD4P09016 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXD4P09016 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HOXD4P09016 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HOXD4P09016 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
HOXD4P09016 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD4P09016 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXD4P09016 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXD4P09016 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXD4P09016 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXD4P09016 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXD4P09016 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
HOXD4P09016 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.56■□□□□ 0.72
HOXD4P09016 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms