Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 AC079089.2-201ENST00000531211 1277 ntBASIC20.42■□□□□ 0.86
LDB3O75112 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.42■□□□□ 0.86
LDB3O75112 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.42■□□□□ 0.86
LDB3O75112 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB3O75112 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.41■□□□□ 0.86
LDB3O75112 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB3O75112 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB3O75112 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.41■□□□□ 0.86
LDB3O75112 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDB3O75112 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.41■□□□□ 0.86
LDB3O75112 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.41■□□□□ 0.86
LDB3O75112 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.41■□□□□ 0.86
LDB3O75112 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB3O75112 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
LDB3O75112 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB3O75112 AL117328.2-201ENST00000624617 1940 ntBASIC20.41■□□□□ 0.86
LDB3O75112 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDB3O75112 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB3O75112 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB3O75112 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB3O75112 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB3O75112 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB3O75112 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB3O75112 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LDB3O75112 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.4■□□□□ 0.86
LDB3O75112 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB3O75112 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB3O75112 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.4■□□□□ 0.86
LDB3O75112 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.4■□□□□ 0.86
LDB3O75112 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
LDB3O75112 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB3O75112 LINC00526-201ENST00000581067 1875 ntBASIC20.4■□□□□ 0.86
LDB3O75112 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
LDB3O75112 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LDB3O75112 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
LDB3O75112 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.39■□□□□ 0.85
LDB3O75112 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB3O75112 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LDB3O75112 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.39■□□□□ 0.85
LDB3O75112 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.39■□□□□ 0.85
LDB3O75112 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB3O75112 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB3O75112 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
LDB3O75112 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
LDB3O75112 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB3O75112 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB3O75112 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB3O75112 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB3O75112 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB3O75112 ZNRF2P3-201ENST00000424200 374 ntBASIC20.38■□□□□ 0.85
LDB3O75112 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.38■□□□□ 0.85
LDB3O75112 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.38■□□□□ 0.85
LDB3O75112 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB3O75112 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.38■□□□□ 0.85
LDB3O75112 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.38■□□□□ 0.85
LDB3O75112 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.38■□□□□ 0.85
LDB3O75112 AC242852.2-201ENST00000615738 1807 ntBASIC20.38■□□□□ 0.85
LDB3O75112 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB3O75112 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB3O75112 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.37■□□□□ 0.85
LDB3O75112 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.37■□□□□ 0.85
LDB3O75112 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
LDB3O75112 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LDB3O75112 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB3O75112 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.36■□□□□ 0.85
LDB3O75112 MIR572-201ENST00000384983 95 ntBASIC20.36■□□□□ 0.85
LDB3O75112 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.36■□□□□ 0.85
LDB3O75112 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB3O75112 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB3O75112 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB3O75112 EP400NL-214ENST00000641289 2402 ntBASIC20.36■□□□□ 0.85
LDB3O75112 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
LDB3O75112 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LDB3O75112 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB3O75112 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB3O75112 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB3O75112 AC019069.1-201ENST00000610008 1333 ntBASIC20.35■□□□□ 0.85
LDB3O75112 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.35■□□□□ 0.85
LDB3O75112 IRS3P-201ENST00000223076 1006 ntBASIC20.35■□□□□ 0.85
LDB3O75112 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.35■□□□□ 0.85
LDB3O75112 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB3O75112 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms