Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SSX4O60224 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SSX4O60224 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SSX4O60224 AC004448.1-201ENST00000458332 883 ntBASIC19.52■□□□□ 0.72
SSX4O60224 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.52■□□□□ 0.72
SSX4O60224 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX4O60224 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SSX4O60224 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SSX4O60224 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.52■□□□□ 0.71
SSX4O60224 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.51■□□□□ 0.71
SSX4O60224 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.51■□□□□ 0.71
SSX4O60224 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SSX4O60224 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.51■□□□□ 0.71
SSX4O60224 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX4O60224 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX4O60224 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX4O60224 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX4O60224 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.5■□□□□ 0.71
SSX4O60224 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.5■□□□□ 0.71
SSX4O60224 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SSX4O60224 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.5■□□□□ 0.71
SSX4O60224 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX4O60224 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX4O60224 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SSX4O60224 AC135279.3-201ENST00000610945 1311 ntBASIC19.5■□□□□ 0.71
SSX4O60224 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SSX4O60224 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX4O60224 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX4O60224 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SSX4O60224 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX4O60224 AC092053.2-201ENST00000640557 1818 ntBASIC19.49■□□□□ 0.71
SSX4O60224 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SSX4O60224 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.49■□□□□ 0.71
SSX4O60224 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.49■□□□□ 0.71
SSX4O60224 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.49■□□□□ 0.71
SSX4O60224 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX4O60224 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.49■□□□□ 0.71
SSX4O60224 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SSX4O60224 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SSX4O60224 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.49■□□□□ 0.71
SSX4O60224 AC005703.6-201ENST00000623265 1329 ntBASIC19.49■□□□□ 0.71
SSX4O60224 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SSX4O60224 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SSX4O60224 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 ESRRAP2-201ENST00000418437 1549 ntBASIC19.48■□□□□ 0.71
SSX4O60224 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
SSX4O60224 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SSX4O60224 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.48■□□□□ 0.71
SSX4O60224 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SSX4O60224 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.47■□□□□ 0.71
SSX4O60224 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SSX4O60224 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SSX4O60224 ZNRF2P3-201ENST00000424200 374 ntBASIC19.47■□□□□ 0.71
SSX4O60224 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.47■□□□□ 0.71
SSX4O60224 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.47■□□□□ 0.71
SSX4O60224 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SSX4O60224 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SSX4O60224 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
SSX4O60224 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
SSX4O60224 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX4O60224 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX4O60224 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.46■□□□□ 0.71
SSX4O60224 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.46■□□□□ 0.71
SSX4O60224 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX4O60224 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SSX4O60224 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SSX4O60224 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
SSX4O60224 AC024257.2-201ENST00000549699 147 ntBASIC19.46■□□□□ 0.71
SSX4O60224 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SSX4O60224 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX4O60224 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX4O60224 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX4O60224 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX4O60224 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms