Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SLC28A1O00337 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SLC28A1O00337 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SLC28A1O00337 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SLC28A1O00337 FAM99A-202ENST00000538190 1989 ntBASIC20.86■□□□□ 0.93
SLC28A1O00337 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.86■□□□□ 0.93
SLC28A1O00337 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC28A1O00337 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
SLC28A1O00337 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC28A1O00337 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SLC28A1O00337 MIR3621-201ENST00000580529 85 ntBASIC20.86■□□□□ 0.93
SLC28A1O00337 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.86■□□□□ 0.93
SLC28A1O00337 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SLC28A1O00337 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
SLC28A1O00337 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
SLC28A1O00337 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SLC28A1O00337 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC28A1O00337 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.86■□□□□ 0.93
SLC28A1O00337 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC28A1O00337 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC28A1O00337 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC28A1O00337 GUSBP5-201ENST00000418136 578 ntBASIC20.85■□□□□ 0.93
SLC28A1O00337 AC068587.7-201ENST00000641602 218 ntBASIC20.85■□□□□ 0.93
SLC28A1O00337 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.85■□□□□ 0.93
SLC28A1O00337 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SLC28A1O00337 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC28A1O00337 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC28A1O00337 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC28A1O00337 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.85■□□□□ 0.93
SLC28A1O00337 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC28A1O00337 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC28A1O00337 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
SLC28A1O00337 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.85■□□□□ 0.93
SLC28A1O00337 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SLC28A1O00337 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.84■□□□□ 0.93
SLC28A1O00337 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.84■□□□□ 0.93
SLC28A1O00337 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC28A1O00337 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC28A1O00337 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.83■□□□□ 0.93
SLC28A1O00337 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.83■□□□□ 0.93
SLC28A1O00337 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
SLC28A1O00337 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.83■□□□□ 0.93
SLC28A1O00337 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC28A1O00337 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.83■□□□□ 0.93
SLC28A1O00337 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.83■□□□□ 0.93
SLC28A1O00337 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.83■□□□□ 0.93
SLC28A1O00337 AC092171.4-201ENST00000609130 632 ntBASIC20.83■□□□□ 0.93
SLC28A1O00337 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.83■□□□□ 0.93
SLC28A1O00337 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
SLC28A1O00337 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SLC28A1O00337 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SLC28A1O00337 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.83■□□□□ 0.92
SLC28A1O00337 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.82■□□□□ 0.92
SLC28A1O00337 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SLC28A1O00337 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SLC28A1O00337 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SLC28A1O00337 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SLC28A1O00337 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SLC28A1O00337 SRD5A1P1-201ENST00000442297 786 ntBASIC20.82■□□□□ 0.92
SLC28A1O00337 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SLC28A1O00337 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.82■□□□□ 0.92
SLC28A1O00337 MIR3181-201ENST00000578512 73 ntBASIC20.82■□□□□ 0.92
SLC28A1O00337 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.82■□□□□ 0.92
SLC28A1O00337 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SLC28A1O00337 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SLC28A1O00337 AC244015.2-201ENST00000616358 1861 ntBASIC20.81■□□□□ 0.92
SLC28A1O00337 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SLC28A1O00337 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.81■□□□□ 0.92
SLC28A1O00337 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.81■□□□□ 0.92
SLC28A1O00337 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.81■□□□□ 0.92
SLC28A1O00337 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC28A1O00337 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SLC28A1O00337 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC28A1O00337 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SLC28A1O00337 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SLC28A1O00337 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC28A1O00337 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.8■□□□□ 0.92
SLC28A1O00337 OR2I1P-207ENST00000453522 948 ntBASIC20.8■□□□□ 0.92
SLC28A1O00337 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms