Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 AC069152.1-201ENST00000438030 544 ntBASIC19.77■□□□□ 0.76
SHANK1Q9Y566 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 LINC01124-201ENST00000409786 2117 ntBASIC19.77■□□□□ 0.76
SHANK1Q9Y566 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK1Q9Y566 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
SHANK1Q9Y566 AC098934.4-201ENST00000564127 592 ntBASIC19.77■□□□□ 0.75
SHANK1Q9Y566 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHANK1Q9Y566 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 SMUG1P1-201ENST00000590640 811 ntBASIC19.76■□□□□ 0.75
SHANK1Q9Y566 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.76■□□□□ 0.75
SHANK1Q9Y566 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 LINC00543-201ENST00000567234 1845 ntBASIC19.75■□□□□ 0.75
SHANK1Q9Y566 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 CNN2P6-201ENST00000439038 900 ntBASIC19.75■□□□□ 0.75
SHANK1Q9Y566 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.75■□□□□ 0.75
SHANK1Q9Y566 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 AL138781.1-201ENST00000566567 1274 ntBASIC19.74■□□□□ 0.75
SHANK1Q9Y566 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 AC087239.1-201ENST00000622671 572 ntBASIC19.74■□□□□ 0.75
SHANK1Q9Y566 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK1Q9Y566 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK1Q9Y566 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 AC104187.1-201ENST00000607510 612 ntBASIC19.72■□□□□ 0.75
SHANK1Q9Y566 AL121832.2-201ENST00000610979 668 ntBASIC19.72■□□□□ 0.75
SHANK1Q9Y566 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK1Q9Y566 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK1Q9Y566 TSPY6P-201ENST00000448518 926 ntBASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms