Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
DDX28Q9NUL7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
DDX28Q9NUL7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 BX664725.1-201ENST00000438252 379 ntBASIC19.73■□□□□ 0.75
DDX28Q9NUL7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
DDX28Q9NUL7 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DDX28Q9NUL7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 MIR6722-201ENST00000617286 78 ntBASIC19.71■□□□□ 0.75
DDX28Q9NUL7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
DDX28Q9NUL7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 AC131212.1-201ENST00000613771 668 ntBASIC19.7■□□□□ 0.74
DDX28Q9NUL7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DDX28Q9NUL7 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms