Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 SLC29A4P1-201ENST00000398760 971 ntBASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 MIR4651-201ENST00000582622 73 ntBASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 UBE2DNL-204ENST00000602536 740 ntBASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
SLC44A3Q8N4M1 AL353803.4-201ENST00000565882 1934 ntBASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SLC44A3Q8N4M1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SLC44A3Q8N4M1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SLC44A3Q8N4M1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
SLC44A3Q8N4M1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
SLC44A3Q8N4M1 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC22.44■■□□□ 1.18
SLC44A3Q8N4M1 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SLC44A3Q8N4M1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
SLC44A3Q8N4M1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 AC009237.3-201ENST00000393279 1427 ntBASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 AC069152.1-201ENST00000438030 544 ntBASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SLC44A3Q8N4M1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 MED17-227ENST00000640521 2047 ntTSL 5 BASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 FAM201B-201ENST00000458407 597 ntBASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 AC142381.3-201ENST00000568208 1670 ntBASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SLC44A3Q8N4M1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SLC44A3Q8N4M1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 MYCNOS-205ENST00000641950 531 ntBASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 AC133041.1-202ENST00000642053 222 ntBASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
SLC44A3Q8N4M1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
SLC44A3Q8N4M1 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.39■■□□□ 1.18
SLC44A3Q8N4M1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 AP001160.3-201ENST00000601484 763 ntBASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
SLC44A3Q8N4M1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SLC44A3Q8N4M1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SLC44A3Q8N4M1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.38■■□□□ 1.17
SLC44A3Q8N4M1 AC073210.2-201ENST00000430369 194 ntBASIC22.38■■□□□ 1.17
SLC44A3Q8N4M1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC22.38■■□□□ 1.17
SLC44A3Q8N4M1 AF201337.1-201ENST00000520239 748 ntBASIC22.38■■□□□ 1.17
SLC44A3Q8N4M1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SLC44A3Q8N4M1 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms