Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PPP4R4Q6NUP7 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 AL121603.2-201ENST00000557373 2117 ntBASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 FAM99A-202ENST00000538190 1989 ntBASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.72■□□□□ 0.91
PPP4R4Q6NUP7 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 AC010997.5-201ENST00000609182 354 ntBASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PPP4R4Q6NUP7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
PPP4R4Q6NUP7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PPP4R4Q6NUP7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 AC087742.1-201ENST00000575880 1738 ntBASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.69■□□□□ 0.9
PPP4R4Q6NUP7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 AC010542.4-201ENST00000563151 1910 ntBASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PPP4R4Q6NUP7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms