Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.54■■□□□ 1.36
KRT39Q6A163 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
KRT39Q6A163 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
KRT39Q6A163 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
KRT39Q6A163 EDA-201ENST00000338901 1233 ntBASIC23.53■■□□□ 1.36
KRT39Q6A163 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.53■■□□□ 1.36
KRT39Q6A163 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.53■■□□□ 1.36
KRT39Q6A163 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
KRT39Q6A163 AC079089.2-201ENST00000531211 1277 ntBASIC23.53■■□□□ 1.36
KRT39Q6A163 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.53■■□□□ 1.36
KRT39Q6A163 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.53■■□□□ 1.36
KRT39Q6A163 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
KRT39Q6A163 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23.53■■□□□ 1.36
KRT39Q6A163 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
KRT39Q6A163 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
KRT39Q6A163 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC23.53■■□□□ 1.36
KRT39Q6A163 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
KRT39Q6A163 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
KRT39Q6A163 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.53■■□□□ 1.36
KRT39Q6A163 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
KRT39Q6A163 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
KRT39Q6A163 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.52■■□□□ 1.36
KRT39Q6A163 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
KRT39Q6A163 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
KRT39Q6A163 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.52■■□□□ 1.36
KRT39Q6A163 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
KRT39Q6A163 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.52■■□□□ 1.36
KRT39Q6A163 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
KRT39Q6A163 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
KRT39Q6A163 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
KRT39Q6A163 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.52■■□□□ 1.35
KRT39Q6A163 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
KRT39Q6A163 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
KRT39Q6A163 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.51■■□□□ 1.35
KRT39Q6A163 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
KRT39Q6A163 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
KRT39Q6A163 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.51■■□□□ 1.35
KRT39Q6A163 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
KRT39Q6A163 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.51■■□□□ 1.35
KRT39Q6A163 AC092053.2-201ENST00000640557 1818 ntBASIC23.51■■□□□ 1.35
KRT39Q6A163 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
KRT39Q6A163 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
KRT39Q6A163 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
KRT39Q6A163 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
KRT39Q6A163 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.5■■□□□ 1.35
KRT39Q6A163 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.5■■□□□ 1.35
KRT39Q6A163 AC133561.4-201ENST00000566112 224 ntBASIC23.5■■□□□ 1.35
KRT39Q6A163 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
KRT39Q6A163 AL355001.2-201ENST00000620617 1191 ntBASIC23.5■■□□□ 1.35
KRT39Q6A163 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
KRT39Q6A163 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
KRT39Q6A163 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
KRT39Q6A163 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.5■■□□□ 1.35
KRT39Q6A163 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
KRT39Q6A163 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
KRT39Q6A163 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.49■■□□□ 1.35
KRT39Q6A163 OXCT2P1-201ENST00000447263 1535 ntBASIC23.49■■□□□ 1.35
KRT39Q6A163 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC23.49■■□□□ 1.35
KRT39Q6A163 AC008764.7-201ENST00000593779 1081 ntBASIC23.49■■□□□ 1.35
KRT39Q6A163 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.49■■□□□ 1.35
KRT39Q6A163 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
KRT39Q6A163 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.49■■□□□ 1.35
KRT39Q6A163 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
KRT39Q6A163 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
KRT39Q6A163 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
KRT39Q6A163 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.49■■□□□ 1.35
KRT39Q6A163 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT39Q6A163 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT39Q6A163 AP001330.3-201ENST00000520123 633 ntBASIC23.48■■□□□ 1.35
KRT39Q6A163 AC027682.1-201ENST00000562846 899 ntBASIC23.48■■□□□ 1.35
KRT39Q6A163 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.48■■□□□ 1.35
KRT39Q6A163 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT39Q6A163 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.48■■□□□ 1.35
KRT39Q6A163 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT39Q6A163 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
KRT39Q6A163 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT39Q6A163 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
KRT39Q6A163 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
KRT39Q6A163 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT39Q6A163 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT39Q6A163 AC126544.1-201ENST00000580842 1059 ntBASIC23.47■■□□□ 1.35
KRT39Q6A163 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT39Q6A163 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT39Q6A163 AL031432.3-201ENST00000607698 485 ntBASIC23.47■■□□□ 1.35
KRT39Q6A163 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
KRT39Q6A163 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
KRT39Q6A163 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
KRT39Q6A163 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
KRT39Q6A163 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
KRT39Q6A163 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
KRT39Q6A163 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.46■■□□□ 1.35
KRT39Q6A163 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms