Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.54■□□□□ 0.88
RUNDC3AQ59EK9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RUNDC3AQ59EK9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
RUNDC3AQ59EK9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RUNDC3AQ59EK9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
RUNDC3AQ59EK9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RUNDC3AQ59EK9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RUNDC3AQ59EK9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
RUNDC3AQ59EK9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RUNDC3AQ59EK9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 AL499627.2-201ENST00000606283 725 ntBASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.51■□□□□ 0.87
RUNDC3AQ59EK9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 MTDHP2-201ENST00000601468 714 ntBASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 AC005229.4-201ENST00000610085 2198 ntBASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RUNDC3AQ59EK9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 Z92544.1-202ENST00000571933 1220 ntBASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
RUNDC3AQ59EK9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 KRT125P-201ENST00000546827 989 ntBASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RUNDC3AQ59EK9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RUNDC3AQ59EK9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.47■□□□□ 0.87
RUNDC3AQ59EK9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.47■□□□□ 0.87
RUNDC3AQ59EK9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.47■□□□□ 0.87
RUNDC3AQ59EK9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RUNDC3AQ59EK9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms