Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 AC092437.1-201ENST00000624794 1048 ntBASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 LINC00526-201ENST00000581067 1875 ntBASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC144BQ3MJ40 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 AC092068.2-201ENST00000590491 1708 ntBASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 LSR-203ENST00000360798 1963 ntTSL 2 BASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 GUSBP5-202ENST00000510805 1989 ntBASIC25.24■■□□□ 1.63
CCDC144BQ3MJ40 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 FP325331.1-202ENST00000623531 1380 ntBASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 OR2I1P-207ENST00000453522 948 ntBASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 CCDC92B-201ENST00000575506 885 ntBASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
CCDC144BQ3MJ40 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 DUX4L4-201ENST00000566884 1269 ntBASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC25.22■■□□□ 1.63
CCDC144BQ3MJ40 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 EFS-203ENST00000429593 2610 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC144BQ3MJ40 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CCDC144BQ3MJ40 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CCDC144BQ3MJ40 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
CCDC144BQ3MJ40 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC144BQ3MJ40 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC144BQ3MJ40 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC25.2■■□□□ 1.62
CCDC144BQ3MJ40 USP48-205ENST00000421625 2818 ntTSL 2 BASIC25.2■■□□□ 1.62
CCDC144BQ3MJ40 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.2■■□□□ 1.62
CCDC144BQ3MJ40 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms