Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RFX4Q33E94 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX4Q33E94 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX4Q33E94 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX4Q33E94 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.17■□□□□ 0.82
RFX4Q33E94 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX4Q33E94 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX4Q33E94 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.17■□□□□ 0.82
RFX4Q33E94 AL033527.3-201ENST00000566366 1196 ntBASIC20.17■□□□□ 0.82
RFX4Q33E94 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFX4Q33E94 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX4Q33E94 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX4Q33E94 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RFX4Q33E94 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RFX4Q33E94 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RFX4Q33E94 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
RFX4Q33E94 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.16■□□□□ 0.82
RFX4Q33E94 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.16■□□□□ 0.82
RFX4Q33E94 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.16■□□□□ 0.82
RFX4Q33E94 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
RFX4Q33E94 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX4Q33E94 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX4Q33E94 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX4Q33E94 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX4Q33E94 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX4Q33E94 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX4Q33E94 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX4Q33E94 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX4Q33E94 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.15■□□□□ 0.82
RFX4Q33E94 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.15■□□□□ 0.82
RFX4Q33E94 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.15■□□□□ 0.82
RFX4Q33E94 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
RFX4Q33E94 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RFX4Q33E94 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX4Q33E94 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
RFX4Q33E94 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX4Q33E94 LINC01960-201ENST00000563759 1884 ntBASIC20.14■□□□□ 0.81
RFX4Q33E94 YBX1P4-201ENST00000392794 808 ntBASIC20.14■□□□□ 0.81
RFX4Q33E94 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFX4Q33E94 AC103724.3-201ENST00000564481 992 ntBASIC20.14■□□□□ 0.81
RFX4Q33E94 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
RFX4Q33E94 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.14■□□□□ 0.81
RFX4Q33E94 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX4Q33E94 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX4Q33E94 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX4Q33E94 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.13■□□□□ 0.81
RFX4Q33E94 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RFX4Q33E94 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFX4Q33E94 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.13■□□□□ 0.81
RFX4Q33E94 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX4Q33E94 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX4Q33E94 AC137630.3-201ENST00000607245 391 ntBASIC20.13■□□□□ 0.81
RFX4Q33E94 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.13■□□□□ 0.81
RFX4Q33E94 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX4Q33E94 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX4Q33E94 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.13■□□□□ 0.81
RFX4Q33E94 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.13■□□□□ 0.81
RFX4Q33E94 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX4Q33E94 KRT8P33-201ENST00000508125 1423 ntBASIC20.12■□□□□ 0.81
RFX4Q33E94 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
RFX4Q33E94 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.12■□□□□ 0.81
RFX4Q33E94 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX4Q33E94 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX4Q33E94 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX4Q33E94 AL121603.2-201ENST00000557373 2117 ntBASIC20.12■□□□□ 0.81
RFX4Q33E94 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX4Q33E94 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX4Q33E94 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
RFX4Q33E94 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.12■□□□□ 0.81
RFX4Q33E94 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.11■□□□□ 0.81
RFX4Q33E94 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.11■□□□□ 0.81
RFX4Q33E94 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
RFX4Q33E94 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.11■□□□□ 0.81
RFX4Q33E94 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.11■□□□□ 0.81
RFX4Q33E94 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.11■□□□□ 0.81
RFX4Q33E94 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.11■□□□□ 0.81
RFX4Q33E94 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.11■□□□□ 0.81
RFX4Q33E94 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.11■□□□□ 0.81
RFX4Q33E94 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.11■□□□□ 0.81
RFX4Q33E94 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX4Q33E94 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.11■□□□□ 0.81
RFX4Q33E94 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms