Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
PTPN9P43378 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
PTPN9P43378 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
PTPN9P43378 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.68■■□□□ 1.22
PTPN9P43378 AC008764.7-201ENST00000593779 1081 ntBASIC22.68■■□□□ 1.22
PTPN9P43378 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.68■■□□□ 1.22
PTPN9P43378 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 AC092053.2-201ENST00000640557 1818 ntBASIC22.68■■□□□ 1.22
PTPN9P43378 EP400NL-214ENST00000641289 2402 ntBASIC22.68■■□□□ 1.22
PTPN9P43378 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC22.68■■□□□ 1.22
PTPN9P43378 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
PTPN9P43378 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PTPN9P43378 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
PTPN9P43378 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
PTPN9P43378 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 MIR939-201ENST00000401314 82 ntBASIC22.67■■□□□ 1.22
PTPN9P43378 AC099791.1-201ENST00000416440 715 ntBASIC22.67■■□□□ 1.22
PTPN9P43378 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.67■■□□□ 1.22
PTPN9P43378 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC22.67■■□□□ 1.22
PTPN9P43378 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.67■■□□□ 1.22
PTPN9P43378 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTPN9P43378 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.66■■□□□ 1.22
PTPN9P43378 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
PTPN9P43378 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTPN9P43378 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC22.66■■□□□ 1.22
PTPN9P43378 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PTPN9P43378 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PTPN9P43378 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTPN9P43378 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.66■■□□□ 1.22
PTPN9P43378 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PTPN9P43378 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
PTPN9P43378 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PTPN9P43378 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PTPN9P43378 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
PTPN9P43378 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTPN9P43378 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC22.65■■□□□ 1.22
PTPN9P43378 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PTPN9P43378 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC22.65■■□□□ 1.22
PTPN9P43378 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTPN9P43378 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PTPN9P43378 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.65■■□□□ 1.22
PTPN9P43378 SUDS3P1-201ENST00000505831 966 ntBASIC22.65■■□□□ 1.22
PTPN9P43378 IGHV3-19-201ENST00000521488 291 ntBASIC22.65■■□□□ 1.22
PTPN9P43378 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.65■■□□□ 1.22
PTPN9P43378 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.65■■□□□ 1.22
PTPN9P43378 AF213884.3-201ENST00000563833 479 ntBASIC22.65■■□□□ 1.22
PTPN9P43378 AC126544.1-201ENST00000580842 1059 ntBASIC22.65■■□□□ 1.22
PTPN9P43378 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.65■■□□□ 1.22
PTPN9P43378 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.65■■□□□ 1.22
PTPN9P43378 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTPN9P43378 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PTPN9P43378 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC22.64■■□□□ 1.22
PTPN9P43378 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.64■■□□□ 1.21
PTPN9P43378 AL136967.2-201ENST00000623968 743 ntBASIC22.64■■□□□ 1.21
PTPN9P43378 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PTPN9P43378 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTPN9P43378 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTPN9P43378 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.64■■□□□ 1.21
PTPN9P43378 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTPN9P43378 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PTPN9P43378 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PTPN9P43378 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTPN9P43378 RASA4CP-201ENST00000424092 1398 ntBASIC22.63■■□□□ 1.21
PTPN9P43378 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
PTPN9P43378 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTPN9P43378 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PTPN9P43378 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTPN9P43378 AC091305.1-201ENST00000479476 895 ntBASIC22.63■■□□□ 1.21
PTPN9P43378 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.63■■□□□ 1.21
PTPN9P43378 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.63■■□□□ 1.21
PTPN9P43378 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTPN9P43378 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
PTPN9P43378 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.63■■□□□ 1.21
PTPN9P43378 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC22.63■■□□□ 1.21
PTPN9P43378 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PTPN9P43378 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTPN9P43378 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.63■■□□□ 1.21
PTPN9P43378 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
PTPN9P43378 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTPN9P43378 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTPN9P43378 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTPN9P43378 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms