Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN9O95484 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN9O95484 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN9O95484 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN9O95484 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.06■□□□□ 0.96
CLDN9O95484 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CLDN9O95484 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN9O95484 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
CLDN9O95484 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CLDN9O95484 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.05■□□□□ 0.96
CLDN9O95484 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN9O95484 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN9O95484 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.05■□□□□ 0.96
CLDN9O95484 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.05■□□□□ 0.96
CLDN9O95484 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.05■□□□□ 0.96
CLDN9O95484 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.05■□□□□ 0.96
CLDN9O95484 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN9O95484 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN9O95484 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CLDN9O95484 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN9O95484 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN9O95484 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN9O95484 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN9O95484 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CLDN9O95484 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN9O95484 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN9O95484 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.04■□□□□ 0.96
CLDN9O95484 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN9O95484 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN9O95484 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN9O95484 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN9O95484 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN9O95484 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN9O95484 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.03■□□□□ 0.96
CLDN9O95484 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CLDN9O95484 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN9O95484 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN9O95484 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN9O95484 MIR4466-201ENST00000606121 54 ntBASIC21.03■□□□□ 0.96
CLDN9O95484 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.03■□□□□ 0.96
CLDN9O95484 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CLDN9O95484 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.03■□□□□ 0.96
CLDN9O95484 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.03■□□□□ 0.96
CLDN9O95484 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CLDN9O95484 CLDN5-201ENST00000403084 2357 ntBASIC21.02■□□□□ 0.96
CLDN9O95484 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN9O95484 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN9O95484 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN9O95484 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN9O95484 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CLDN9O95484 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CLDN9O95484 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.02■□□□□ 0.96
CLDN9O95484 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN9O95484 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
CLDN9O95484 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN9O95484 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN9O95484 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLDN9O95484 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLDN9O95484 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN9O95484 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CLDN9O95484 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN9O95484 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN9O95484 OR2I1P-207ENST00000453522 948 ntBASIC21.01■□□□□ 0.95
CLDN9O95484 DUX4L19-201ENST00000557448 1267 ntBASIC21.01■□□□□ 0.95
CLDN9O95484 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN9O95484 AC068587.7-201ENST00000641602 218 ntBASIC21.01■□□□□ 0.95
CLDN9O95484 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN9O95484 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN9O95484 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN9O95484 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN9O95484 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21■□□□□ 0.95
CLDN9O95484 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21■□□□□ 0.95
CLDN9O95484 PTCHD3P2-201ENST00000424937 1205 ntBASIC21■□□□□ 0.95
CLDN9O95484 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21■□□□□ 0.95
CLDN9O95484 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CLDN9O95484 SYT6-210ENST00000641643 1587 ntBASIC21■□□□□ 0.95
CLDN9O95484 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN9O95484 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN9O95484 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
CLDN9O95484 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN9O95484 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN9O95484 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.99■□□□□ 0.95
CLDN9O95484 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN9O95484 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN9O95484 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN9O95484 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN9O95484 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CLDN9O95484 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN9O95484 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN9O95484 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN9O95484 AC131281.2-201ENST00000520478 145 ntBASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms