Protein–RNA interactions for Protein: A0A0K0K1C4

TRBV27, T-cell receptor beta variable 27 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV27A0A0K0K1C4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.37■□□□□ 0.05
TRBV27A0A0K0K1C4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 PVT1_1.1-201ENST00000615125 194 ntBASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 AC073130.3-201ENST00000624389 2278 ntBASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRBV27A0A0K0K1C4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 MIR6722-201ENST00000617286 78 ntBASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC15.35■□□□□ 0.05
TRBV27A0A0K0K1C4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 FEM1AP4-201ENST00000443167 1987 ntBASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRBV27A0A0K0K1C4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC15.33■□□□□ 0.05
TRBV27A0A0K0K1C4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRBV27A0A0K0K1C4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC15.33■□□□□ 0.05
TRBV27A0A0K0K1C4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC15.33■□□□□ 0.05
TRBV27A0A0K0K1C4 AC004687.1-201ENST00000579003 1625 ntBASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 BEX3-202ENST00000372634 753 ntTSL 2 BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC15.33■□□□□ 0.04
TRBV27A0A0K0K1C4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRBV27A0A0K0K1C4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms