Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC11.33□□□□□ -0.6
CDC42SE1Q9NRR8 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 AC142472.1-201ENST00000612013 1741 ntBASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
CDC42SE1Q9NRR8 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC11.31□□□□□ -0.6
CDC42SE1Q9NRR8 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 AC092053.2-201ENST00000640557 1818 ntBASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CDC42SE1Q9NRR8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CDC42SE1Q9NRR8 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms