Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
VCX3AQ9NNX9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VCX3AQ9NNX9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VCX3AQ9NNX9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VCX3AQ9NNX9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.84
VCX3AQ9NNX9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VCX3AQ9NNX9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VCX3AQ9NNX9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
VCX3AQ9NNX9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L13-201ENST00000554103 1267 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L15-201ENST00000611059 1267 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L23-201ENST00000615195 1269 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L24-201ENST00000617576 1269 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L22-201ENST00000618238 1269 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L20-201ENST00000619712 1269 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L21-201ENST00000622058 1269 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L10-201ENST00000622460 1267 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DUX4L25-201ENST00000624915 1269 ntBASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCX3AQ9NNX9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCX3AQ9NNX9 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 AC080038.3-201ENST00000623346 1952 ntBASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCX3AQ9NNX9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 KRT18P10-201ENST00000388836 1287 ntBASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 HLA-V-202ENST00000446817 847 ntBASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCX3AQ9NNX9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms