Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM39Q9HCM9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.61■■□□□ 1.05
TRIM39Q9HCM9 MIR572-201ENST00000384983 95 ntBASIC21.61■■□□□ 1.05
TRIM39Q9HCM9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.61■■□□□ 1.05
TRIM39Q9HCM9 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.61■■□□□ 1.05
TRIM39Q9HCM9 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.61■■□□□ 1.05
TRIM39Q9HCM9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.61■■□□□ 1.05
TRIM39Q9HCM9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM39Q9HCM9 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM39Q9HCM9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
TRIM39Q9HCM9 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.58■■□□□ 1.05
TRIM39Q9HCM9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM39Q9HCM9 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.58■■□□□ 1.05
TRIM39Q9HCM9 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM39Q9HCM9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM39Q9HCM9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.58■■□□□ 1.05
TRIM39Q9HCM9 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.58■■□□□ 1.05
TRIM39Q9HCM9 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TRIM39Q9HCM9 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.58■■□□□ 1.04
TRIM39Q9HCM9 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRIM39Q9HCM9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRIM39Q9HCM9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.57■■□□□ 1.04
TRIM39Q9HCM9 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 OXCT2P1-201ENST00000447263 1535 ntBASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM39Q9HCM9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
TRIM39Q9HCM9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 AL358852.1-201ENST00000623174 1268 ntBASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms