Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.56■■□□□ 1.2
PCDH9Q9HC56 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDH9Q9HC56 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 AL136116.3-201ENST00000402907 1138 ntBASIC22.55■■□□□ 1.2
PCDH9Q9HC56 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC22.55■■□□□ 1.2
PCDH9Q9HC56 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 AC008406.3-201ENST00000620001 1374 ntBASIC22.54■■□□□ 1.2
PCDH9Q9HC56 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 AC241377.3-202ENST00000626088 1088 ntBASIC22.54■■□□□ 1.2
PCDH9Q9HC56 AC241585.3-202ENST00000628937 1088 ntBASIC22.54■■□□□ 1.2
PCDH9Q9HC56 AC245100.8-202ENST00000629247 1058 ntBASIC22.54■■□□□ 1.2
PCDH9Q9HC56 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
PCDH9Q9HC56 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 AC007375.3-201ENST00000600936 2314 ntBASIC22.53■■□□□ 1.2
PCDH9Q9HC56 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 AC099791.2-201ENST00000605725 427 ntBASIC22.53■■□□□ 1.2
PCDH9Q9HC56 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 AC004687.1-201ENST00000579003 1625 ntBASIC22.53■■□□□ 1.2
PCDH9Q9HC56 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
PCDH9Q9HC56 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDH9Q9HC56 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDH9Q9HC56 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.51■■□□□ 1.19
PCDH9Q9HC56 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PCDH9Q9HC56 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.51■■□□□ 1.19
PCDH9Q9HC56 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDH9Q9HC56 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC22.51■■□□□ 1.19
PCDH9Q9HC56 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 FBXW4P1-201ENST00000426721 2239 ntBASIC22.5■■□□□ 1.19
PCDH9Q9HC56 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDH9Q9HC56 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDH9Q9HC56 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.49■■□□□ 1.19
PCDH9Q9HC56 CA15P2-201ENST00000611168 834 ntBASIC22.49■■□□□ 1.19
PCDH9Q9HC56 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
PCDH9Q9HC56 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PCDH9Q9HC56 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDH9Q9HC56 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms