Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC26.61■■□□□ 1.85
RPAP1Q9BWH6 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 AL353803.4-201ENST00000565882 1934 ntBASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
RPAP1Q9BWH6 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 MIR6084-201ENST00000622012 110 ntBASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
RPAP1Q9BWH6 AC090192.1-201ENST00000517740 490 ntBASIC26.58■■□□□ 1.85
RPAP1Q9BWH6 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC26.58■■□□□ 1.85
RPAP1Q9BWH6 GCA-201ENST00000233612 1694 ntTSL 2 BASIC26.58■■□□□ 1.85
RPAP1Q9BWH6 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
RPAP1Q9BWH6 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC26.58■■□□□ 1.85
RPAP1Q9BWH6 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC26.58■■□□□ 1.85
RPAP1Q9BWH6 C1orf229-201ENST00000623686 2258 ntBASIC26.58■■□□□ 1.85
RPAP1Q9BWH6 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.84
RPAP1Q9BWH6 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.84
RPAP1Q9BWH6 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC26.58■■□□□ 1.84
RPAP1Q9BWH6 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC26.58■■□□□ 1.84
RPAP1Q9BWH6 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC26.58■■□□□ 1.84
RPAP1Q9BWH6 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
RPAP1Q9BWH6 AC010525.1-201ENST00000585559 441 ntBASIC26.58■■□□□ 1.84
RPAP1Q9BWH6 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
RPAP1Q9BWH6 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 AL137784.2-201ENST00000607332 1000 ntBASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
RPAP1Q9BWH6 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 CCDC92B-201ENST00000575506 885 ntBASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC26.56■■□□□ 1.84
RPAP1Q9BWH6 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 TERF1P2-201ENST00000583350 1212 ntBASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
RPAP1Q9BWH6 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC26.54■■□□□ 1.84
RPAP1Q9BWH6 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC26.54■■□□□ 1.84
RPAP1Q9BWH6 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC26.54■■□□□ 1.84
RPAP1Q9BWH6 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC26.54■■□□□ 1.84
RPAP1Q9BWH6 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
RPAP1Q9BWH6 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
RPAP1Q9BWH6 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RPAP1Q9BWH6 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
RPAP1Q9BWH6 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
RPAP1Q9BWH6 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms