Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 FAM99A-202ENST00000538190 1989 ntBASIC18.97■□□□□ 0.63
NKX3-1Q99801 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.97■□□□□ 0.63
NKX3-1Q99801 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX3-1Q99801 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX3-1Q99801 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
NKX3-1Q99801 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.96■□□□□ 0.63
NKX3-1Q99801 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.96■□□□□ 0.63
NKX3-1Q99801 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.96■□□□□ 0.63
NKX3-1Q99801 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
NKX3-1Q99801 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.96■□□□□ 0.63
NKX3-1Q99801 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.96■□□□□ 0.63
NKX3-1Q99801 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 LINC01529-204ENST00000636474 1715 ntBASIC18.96■□□□□ 0.63
NKX3-1Q99801 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX3-1Q99801 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX3-1Q99801 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NKX3-1Q99801 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX3-1Q99801 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX3-1Q99801 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX3-1Q99801 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX3-1Q99801 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 AC137630.3-201ENST00000607245 391 ntBASIC18.95■□□□□ 0.62
NKX3-1Q99801 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NKX3-1Q99801 AC010542.4-201ENST00000563151 1910 ntBASIC18.95■□□□□ 0.62
NKX3-1Q99801 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NKX3-1Q99801 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.95■□□□□ 0.62
NKX3-1Q99801 LINC01960-201ENST00000563759 1884 ntBASIC18.94■□□□□ 0.62
NKX3-1Q99801 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX3-1Q99801 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX3-1Q99801 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX3-1Q99801 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX3-1Q99801 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX3-1Q99801 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX3-1Q99801 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
NKX3-1Q99801 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX3-1Q99801 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX3-1Q99801 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
NKX3-1Q99801 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.93■□□□□ 0.62
NKX3-1Q99801 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX3-1Q99801 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.93■□□□□ 0.62
NKX3-1Q99801 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.93■□□□□ 0.62
NKX3-1Q99801 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX3-1Q99801 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
NKX3-1Q99801 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.93■□□□□ 0.62
NKX3-1Q99801 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.93■□□□□ 0.62
NKX3-1Q99801 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NKX3-1Q99801 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX3-1Q99801 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX3-1Q99801 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX3-1Q99801 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NKX3-1Q99801 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX3-1Q99801 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NKX3-1Q99801 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX3-1Q99801 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NKX3-1Q99801 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
NKX3-1Q99801 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.92■□□□□ 0.62
NKX3-1Q99801 AC005703.6-201ENST00000623265 1329 ntBASIC18.92■□□□□ 0.62
NKX3-1Q99801 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
NKX3-1Q99801 AC004687.1-201ENST00000579003 1625 ntBASIC18.92■□□□□ 0.62
NKX3-1Q99801 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX3-1Q99801 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX3-1Q99801 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
NKX3-1Q99801 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.91■□□□□ 0.62
NKX3-1Q99801 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX3-1Q99801 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX3-1Q99801 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
NKX3-1Q99801 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
NKX3-1Q99801 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX3-1Q99801 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
NKX3-1Q99801 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX3-1Q99801 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX3-1Q99801 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX3-1Q99801 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX3-1Q99801 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX3-1Q99801 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms