Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.35■□□□□ 0.69
COL12A1Q99715 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.35■□□□□ 0.69
COL12A1Q99715 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.35■□□□□ 0.69
COL12A1Q99715 KRT87P-202ENST00000534226 1464 ntBASIC19.35■□□□□ 0.69
COL12A1Q99715 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.35■□□□□ 0.69
COL12A1Q99715 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL12A1Q99715 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.35■□□□□ 0.69
COL12A1Q99715 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.35■□□□□ 0.69
COL12A1Q99715 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.35■□□□□ 0.69
COL12A1Q99715 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL12A1Q99715 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL12A1Q99715 ALDH1A3-203ENST00000557963 1670 ntBASIC19.34■□□□□ 0.69
COL12A1Q99715 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.34■□□□□ 0.69
COL12A1Q99715 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL12A1Q99715 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.34■□□□□ 0.69
COL12A1Q99715 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL12A1Q99715 AC092803.2-201ENST00000564287 1899 ntBASIC19.34■□□□□ 0.69
COL12A1Q99715 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL12A1Q99715 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.34■□□□□ 0.69
COL12A1Q99715 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
COL12A1Q99715 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.34■□□□□ 0.69
COL12A1Q99715 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.34■□□□□ 0.69
COL12A1Q99715 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.34■□□□□ 0.69
COL12A1Q99715 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL12A1Q99715 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL12A1Q99715 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL12A1Q99715 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL12A1Q99715 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL12A1Q99715 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL12A1Q99715 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
COL12A1Q99715 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL12A1Q99715 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL12A1Q99715 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.33■□□□□ 0.69
COL12A1Q99715 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.33■□□□□ 0.69
COL12A1Q99715 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL12A1Q99715 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.33■□□□□ 0.69
COL12A1Q99715 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.33■□□□□ 0.69
COL12A1Q99715 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.33■□□□□ 0.69
COL12A1Q99715 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.33■□□□□ 0.68
COL12A1Q99715 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL12A1Q99715 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL12A1Q99715 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.33■□□□□ 0.68
COL12A1Q99715 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
COL12A1Q99715 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.33■□□□□ 0.68
COL12A1Q99715 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL12A1Q99715 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
COL12A1Q99715 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
COL12A1Q99715 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
COL12A1Q99715 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL12A1Q99715 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL12A1Q99715 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL12A1Q99715 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL12A1Q99715 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.32■□□□□ 0.68
COL12A1Q99715 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL12A1Q99715 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.32■□□□□ 0.68
COL12A1Q99715 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.32■□□□□ 0.68
COL12A1Q99715 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL12A1Q99715 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.32■□□□□ 0.68
COL12A1Q99715 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.31■□□□□ 0.68
COL12A1Q99715 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL12A1Q99715 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.31■□□□□ 0.68
COL12A1Q99715 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
COL12A1Q99715 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.31■□□□□ 0.68
COL12A1Q99715 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.31■□□□□ 0.68
COL12A1Q99715 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.31■□□□□ 0.68
COL12A1Q99715 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL12A1Q99715 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
COL12A1Q99715 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL12A1Q99715 MIR6089-201ENST00000616698 64 ntBASIC19.31■□□□□ 0.68
COL12A1Q99715 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.31■□□□□ 0.68
COL12A1Q99715 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.31■□□□□ 0.68
COL12A1Q99715 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.3■□□□□ 0.68
COL12A1Q99715 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL12A1Q99715 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.3■□□□□ 0.68
COL12A1Q99715 RCN1P1-201ENST00000400413 996 ntBASIC19.3■□□□□ 0.68
COL12A1Q99715 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.3■□□□□ 0.68
COL12A1Q99715 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.3■□□□□ 0.68
COL12A1Q99715 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL12A1Q99715 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL12A1Q99715 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL12A1Q99715 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.3■□□□□ 0.68
COL12A1Q99715 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL12A1Q99715 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL12A1Q99715 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.29■□□□□ 0.68
COL12A1Q99715 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL12A1Q99715 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
COL12A1Q99715 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.29■□□□□ 0.68
COL12A1Q99715 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.29■□□□□ 0.68
COL12A1Q99715 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL12A1Q99715 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms