Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKP4Q99569 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
PKP4Q99569 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PKP4Q99569 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKP4Q99569 BX842568.3-201ENST00000418104 571 ntBASIC21.26■□□□□ 0.99
PKP4Q99569 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.26■□□□□ 0.99
PKP4Q99569 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.26■□□□□ 0.99
PKP4Q99569 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
PKP4Q99569 CA15P2-201ENST00000611168 834 ntBASIC21.26■□□□□ 0.99
PKP4Q99569 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKP4Q99569 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKP4Q99569 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PKP4Q99569 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
PKP4Q99569 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.26■□□□□ 0.99
PKP4Q99569 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PKP4Q99569 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PKP4Q99569 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKP4Q99569 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
PKP4Q99569 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKP4Q99569 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.25■□□□□ 0.99
PKP4Q99569 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PKP4Q99569 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.25■□□□□ 0.99
PKP4Q99569 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PKP4Q99569 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKP4Q99569 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PKP4Q99569 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
PKP4Q99569 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKP4Q99569 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKP4Q99569 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PKP4Q99569 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
PKP4Q99569 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKP4Q99569 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PKP4Q99569 AC233992.3-201ENST00000607491 485 ntBASIC21.24■□□□□ 0.99
PKP4Q99569 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.24■□□□□ 0.99
PKP4Q99569 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.24■□□□□ 0.99
PKP4Q99569 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
PKP4Q99569 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKP4Q99569 AC080038.3-201ENST00000623346 1952 ntBASIC21.24■□□□□ 0.99
PKP4Q99569 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKP4Q99569 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PKP4Q99569 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.24■□□□□ 0.99
PKP4Q99569 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PKP4Q99569 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKP4Q99569 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKP4Q99569 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PKP4Q99569 EDA-201ENST00000338901 1233 ntBASIC21.23■□□□□ 0.99
PKP4Q99569 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PKP4Q99569 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
PKP4Q99569 AC008764.7-201ENST00000593779 1081 ntBASIC21.23■□□□□ 0.99
PKP4Q99569 AC068587.7-201ENST00000641602 218 ntBASIC21.23■□□□□ 0.99
PKP4Q99569 AC137767.1-201ENST00000602918 1920 ntBASIC21.23■□□□□ 0.99
PKP4Q99569 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
PKP4Q99569 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PKP4Q99569 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PKP4Q99569 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PKP4Q99569 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PKP4Q99569 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
PKP4Q99569 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PKP4Q99569 AL117328.2-201ENST00000624617 1940 ntBASIC21.22■□□□□ 0.99
PKP4Q99569 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.22■□□□□ 0.99
PKP4Q99569 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.22■□□□□ 0.99
PKP4Q99569 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.22■□□□□ 0.99
PKP4Q99569 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.22■□□□□ 0.99
PKP4Q99569 AL031432.3-201ENST00000607698 485 ntBASIC21.22■□□□□ 0.99
PKP4Q99569 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PKP4Q99569 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PKP4Q99569 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.22■□□□□ 0.99
PKP4Q99569 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.21■□□□□ 0.99
PKP4Q99569 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKP4Q99569 AP005435.1-201ENST00000529293 1178 ntBASIC21.21■□□□□ 0.99
PKP4Q99569 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.21■□□□□ 0.99
PKP4Q99569 AC133561.4-201ENST00000566112 224 ntBASIC21.21■□□□□ 0.99
PKP4Q99569 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.21■□□□□ 0.99
PKP4Q99569 AL355001.2-201ENST00000620617 1191 ntBASIC21.21■□□□□ 0.99
PKP4Q99569 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PKP4Q99569 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKP4Q99569 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKP4Q99569 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
PKP4Q99569 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKP4Q99569 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKP4Q99569 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
PKP4Q99569 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
PKP4Q99569 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKP4Q99569 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.2■□□□□ 0.98
PKP4Q99569 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKP4Q99569 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PKP4Q99569 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
PKP4Q99569 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PKP4Q99569 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.2■□□□□ 0.98
PKP4Q99569 AP001330.3-201ENST00000520123 633 ntBASIC21.2■□□□□ 0.98
PKP4Q99569 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PKP4Q99569 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.2■□□□□ 0.98
PKP4Q99569 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
PKP4Q99569 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.2■□□□□ 0.98
PKP4Q99569 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PKP4Q99569 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKP4Q99569 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKP4Q99569 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PKP4Q99569 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PKP4Q99569 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms