Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 UNC93B8-201ENST00000511903 705 ntBASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 MTDHP2-201ENST00000601468 714 ntBASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
DEPDC4Q8N2C3 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
DEPDC4Q8N2C3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
DEPDC4Q8N2C3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 AC087742.1-201ENST00000575880 1738 ntBASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 AC010997.5-201ENST00000609182 354 ntBASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
DEPDC4Q8N2C3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 AC019069.1-201ENST00000610008 1333 ntBASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.16■□□□□ 0.82
DEPDC4Q8N2C3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.15■□□□□ 0.82
DEPDC4Q8N2C3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
DEPDC4Q8N2C3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 AC008406.3-201ENST00000620001 1374 ntBASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.14■□□□□ 0.81
DEPDC4Q8N2C3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 AC026310.3-201ENST00000625186 2373 ntBASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
DEPDC4Q8N2C3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms