Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NUDCD3Q8IVD9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 AC009086.3-201ENST00000623486 1008 ntBASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.63■■□□□ 1.05
NUDCD3Q8IVD9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NUDCD3Q8IVD9 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 AC005229.4-201ENST00000610085 2198 ntBASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NUDCD3Q8IVD9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NUDCD3Q8IVD9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 AC005703.6-201ENST00000623265 1329 ntBASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.59■■□□□ 1.05
NUDCD3Q8IVD9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NUDCD3Q8IVD9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
NUDCD3Q8IVD9 AC244015.2-201ENST00000616358 1861 ntBASIC21.58■■□□□ 1.05
NUDCD3Q8IVD9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NUDCD3Q8IVD9 DUX4L4-201ENST00000566884 1269 ntBASIC21.58■■□□□ 1.05
NUDCD3Q8IVD9 MIR4508-201ENST00000584178 70 ntBASIC21.58■■□□□ 1.05
NUDCD3Q8IVD9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.58■■□□□ 1.04
NUDCD3Q8IVD9 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.04
NUDCD3Q8IVD9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NUDCD3Q8IVD9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
NUDCD3Q8IVD9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.57■■□□□ 1.04
NUDCD3Q8IVD9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NUDCD3Q8IVD9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NUDCD3Q8IVD9 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.56■■□□□ 1.04
NUDCD3Q8IVD9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.56■■□□□ 1.04
NUDCD3Q8IVD9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NUDCD3Q8IVD9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.56■■□□□ 1.04
NUDCD3Q8IVD9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NUDCD3Q8IVD9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NUDCD3Q8IVD9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.55■■□□□ 1.04
NUDCD3Q8IVD9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.55■■□□□ 1.04
NUDCD3Q8IVD9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms