Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
VRK3Q8IV63 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK3Q8IV63 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
VRK3Q8IV63 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.4■■□□□ 1.02
VRK3Q8IV63 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.4■■□□□ 1.02
VRK3Q8IV63 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VRK3Q8IV63 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.4■■□□□ 1.02
VRK3Q8IV63 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK3Q8IV63 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK3Q8IV63 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK3Q8IV63 MIR939-201ENST00000401314 82 ntBASIC21.4■■□□□ 1.02
VRK3Q8IV63 AC099791.1-201ENST00000416440 715 ntBASIC21.4■■□□□ 1.02
VRK3Q8IV63 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.4■■□□□ 1.02
VRK3Q8IV63 CA15P2-201ENST00000611168 834 ntBASIC21.4■■□□□ 1.02
VRK3Q8IV63 AL136967.2-201ENST00000623968 743 ntBASIC21.4■■□□□ 1.02
VRK3Q8IV63 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
VRK3Q8IV63 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK3Q8IV63 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
VRK3Q8IV63 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VRK3Q8IV63 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
VRK3Q8IV63 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
VRK3Q8IV63 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VRK3Q8IV63 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
VRK3Q8IV63 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VRK3Q8IV63 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VRK3Q8IV63 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.39■■□□□ 1.01
VRK3Q8IV63 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.39■■□□□ 1.01
VRK3Q8IV63 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
VRK3Q8IV63 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.38■■□□□ 1.01
VRK3Q8IV63 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VRK3Q8IV63 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VRK3Q8IV63 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
VRK3Q8IV63 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VRK3Q8IV63 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.38■■□□□ 1.01
VRK3Q8IV63 AC005837.3-201ENST00000612163 286 ntBASIC21.38■■□□□ 1.01
VRK3Q8IV63 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VRK3Q8IV63 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
VRK3Q8IV63 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.38■■□□□ 1.01
VRK3Q8IV63 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.38■■□□□ 1.01
VRK3Q8IV63 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
VRK3Q8IV63 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
VRK3Q8IV63 AL117328.2-201ENST00000624617 1940 ntBASIC21.37■■□□□ 1.01
VRK3Q8IV63 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
VRK3Q8IV63 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VRK3Q8IV63 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
VRK3Q8IV63 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VRK3Q8IV63 AC027682.1-201ENST00000562846 899 ntBASIC21.37■■□□□ 1.01
VRK3Q8IV63 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VRK3Q8IV63 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VRK3Q8IV63 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VRK3Q8IV63 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
VRK3Q8IV63 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
VRK3Q8IV63 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
VRK3Q8IV63 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VRK3Q8IV63 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.37■■□□□ 1.01
VRK3Q8IV63 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VRK3Q8IV63 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 AP005435.1-201ENST00000529293 1178 ntBASIC21.36■■□□□ 1.01
VRK3Q8IV63 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 AC126544.1-201ENST00000580842 1059 ntBASIC21.36■■□□□ 1.01
VRK3Q8IV63 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.36■■□□□ 1.01
VRK3Q8IV63 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.36■■□□□ 1.01
VRK3Q8IV63 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
VRK3Q8IV63 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.36■■□□□ 1.01
VRK3Q8IV63 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
VRK3Q8IV63 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VRK3Q8IV63 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
VRK3Q8IV63 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK3Q8IV63 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK3Q8IV63 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK3Q8IV63 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
VRK3Q8IV63 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.35■■□□□ 1.01
VRK3Q8IV63 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.35■■□□□ 1.01
VRK3Q8IV63 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.35■■□□□ 1.01
VRK3Q8IV63 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VRK3Q8IV63 AC068587.7-201ENST00000641602 218 ntBASIC21.35■■□□□ 1.01
VRK3Q8IV63 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
VRK3Q8IV63 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.35■■□□□ 1.01
VRK3Q8IV63 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK3Q8IV63 EP400NL-214ENST00000641289 2402 ntBASIC21.35■■□□□ 1.01
VRK3Q8IV63 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK3Q8IV63 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
VRK3Q8IV63 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK3Q8IV63 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms