Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM3Q53GG5 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 AC120024.1-201ENST00000562672 995 ntBASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 EXOG-217ENST00000630638 197 ntTSL 5 BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM3Q53GG5 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM3Q53GG5 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.96■□□□□ 0.46
PDLIM3Q53GG5 AF131216.4-201ENST00000638924 1588 ntBASIC17.96■□□□□ 0.46
PDLIM3Q53GG5 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM3Q53GG5 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 AC004448.1-201ENST00000458332 883 ntBASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM3Q53GG5 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms