Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TFG-210ENST00000620299 1289 ntTSL 5 BASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 AC231657.2-201ENST00000624556 255 ntBASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 AC079630.1-202ENST00000618127 1840 ntBASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC88AQ3V6T2 TSPY6P-201ENST00000448518 926 ntBASIC27.06■■□□□ 1.92
CCDC88AQ3V6T2 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC88AQ3V6T2 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC88AQ3V6T2 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC88AQ3V6T2 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC88AQ3V6T2 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC27.06■■□□□ 1.92
CCDC88AQ3V6T2 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC88AQ3V6T2 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC88AQ3V6T2 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC88AQ3V6T2 PREB-202ENST00000406567 1910 ntTSL 5 BASIC27.05■■□□□ 1.92
CCDC88AQ3V6T2 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.05■■□□□ 1.92
CCDC88AQ3V6T2 UBE2DNL-204ENST00000602536 740 ntBASIC27.05■■□□□ 1.92
CCDC88AQ3V6T2 TBCB-214ENST00000629269 413 ntTSL 5 BASIC27.05■■□□□ 1.92
CCDC88AQ3V6T2 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC88AQ3V6T2 AL139125.2-201ENST00000623134 1869 ntBASIC27.05■■□□□ 1.92
CCDC88AQ3V6T2 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC88AQ3V6T2 STX4-202ENST00000394998 1498 ntTSL 2 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC88AQ3V6T2 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
CCDC88AQ3V6T2 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
CCDC88AQ3V6T2 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 AC104187.1-201ENST00000607510 612 ntBASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 CNN2P6-201ENST00000439038 900 ntBASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC88AQ3V6T2 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC88AQ3V6T2 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC27.01■■□□□ 1.91
CCDC88AQ3V6T2 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC88AQ3V6T2 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC88AQ3V6T2 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CCDC88AQ3V6T2 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
CCDC88AQ3V6T2 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC27■■□□□ 1.91
CCDC88AQ3V6T2 AC083906.2-201ENST00000511578 360 ntBASIC27■■□□□ 1.91
CCDC88AQ3V6T2 AF201337.1-201ENST00000520239 748 ntBASIC27■■□□□ 1.91
CCDC88AQ3V6T2 AC004812.2-201ENST00000611079 2094 ntBASIC27■■□□□ 1.91
CCDC88AQ3V6T2 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC27■■□□□ 1.91
CCDC88AQ3V6T2 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC27■■□□□ 1.91
CCDC88AQ3V6T2 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC27■■□□□ 1.91
CCDC88AQ3V6T2 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC27■■□□□ 1.91
CCDC88AQ3V6T2 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC88AQ3V6T2 ABCB10P4-201ENST00000566803 2184 ntBASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 RPS2P52-201ENST00000469610 820 ntBASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 ITM2C-210ENST00000620962 501 ntBASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 CPT2-209ENST00000636935 803 ntTSL 5 BASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
CCDC88AQ3V6T2 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC88AQ3V6T2 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC88AQ3V6T2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC88AQ3V6T2 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC26.97■■□□□ 1.91
CCDC88AQ3V6T2 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC88AQ3V6T2 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC88AQ3V6T2 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 FAM201B-201ENST00000458407 597 ntBASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms