Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 AC004854.2-201ENST00000608450 1441 ntBASIC20.95■□□□□ 0.94
COL28A1Q2UY09 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 AL121832.2-201ENST00000610979 668 ntBASIC20.94■□□□□ 0.94
COL28A1Q2UY09 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL28A1Q2UY09 AC004812.2-201ENST00000611079 2094 ntBASIC20.93■□□□□ 0.94
COL28A1Q2UY09 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL28A1Q2UY09 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL28A1Q2UY09 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 TSPY6P-201ENST00000448518 926 ntBASIC20.91■□□□□ 0.94
COL28A1Q2UY09 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 AC083906.2-201ENST00000511578 360 ntBASIC20.91■□□□□ 0.94
COL28A1Q2UY09 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.91■□□□□ 0.94
COL28A1Q2UY09 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL28A1Q2UY09 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL28A1Q2UY09 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL28A1Q2UY09 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL28A1Q2UY09 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.89■□□□□ 0.93
COL28A1Q2UY09 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.89■□□□□ 0.93
COL28A1Q2UY09 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.89■□□□□ 0.93
COL28A1Q2UY09 AL138781.1-201ENST00000566567 1274 ntBASIC20.89■□□□□ 0.93
COL28A1Q2UY09 DUX4L4-201ENST00000566884 1269 ntBASIC20.89■□□□□ 0.93
COL28A1Q2UY09 AC010525.1-201ENST00000585559 441 ntBASIC20.89■□□□□ 0.93
COL28A1Q2UY09 CLDN5-201ENST00000403084 2357 ntBASIC20.89■□□□□ 0.93
COL28A1Q2UY09 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.89■□□□□ 0.93
COL28A1Q2UY09 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL28A1Q2UY09 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms