Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIM2P55344 BX842568.3-201ENST00000418104 571 ntBASIC20.74■□□□□ 0.91
LIM2P55344 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.74■□□□□ 0.91
LIM2P55344 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.74■□□□□ 0.91
LIM2P55344 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIM2P55344 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIM2P55344 AC087742.1-201ENST00000575880 1738 ntBASIC20.73■□□□□ 0.91
LIM2P55344 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIM2P55344 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIM2P55344 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIM2P55344 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIM2P55344 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.73■□□□□ 0.91
LIM2P55344 AL031432.3-201ENST00000607698 485 ntBASIC20.73■□□□□ 0.91
LIM2P55344 AL355001.2-201ENST00000620617 1191 ntBASIC20.73■□□□□ 0.91
LIM2P55344 AL031602.1-201ENST00000633169 911 ntBASIC20.73■□□□□ 0.91
LIM2P55344 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIM2P55344 LINC00526-201ENST00000581067 1875 ntBASIC20.73■□□□□ 0.91
LIM2P55344 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LIM2P55344 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIM2P55344 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
LIM2P55344 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.72■□□□□ 0.91
LIM2P55344 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIM2P55344 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIM2P55344 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIM2P55344 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.72■□□□□ 0.91
LIM2P55344 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.72■□□□□ 0.91
LIM2P55344 AC233992.3-201ENST00000607491 485 ntBASIC20.72■□□□□ 0.91
LIM2P55344 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIM2P55344 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIM2P55344 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIM2P55344 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
LIM2P55344 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIM2P55344 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.71■□□□□ 0.91
LIM2P55344 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIM2P55344 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LIM2P55344 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIM2P55344 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIM2P55344 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIM2P55344 ESRRAP2-201ENST00000418437 1549 ntBASIC20.71■□□□□ 0.91
LIM2P55344 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.71■□□□□ 0.91
LIM2P55344 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LIM2P55344 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
LIM2P55344 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIM2P55344 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIM2P55344 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.7■□□□□ 0.91
LIM2P55344 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIM2P55344 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIM2P55344 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
LIM2P55344 AP001330.3-201ENST00000520123 633 ntBASIC20.7■□□□□ 0.9
LIM2P55344 AC008764.7-201ENST00000593779 1081 ntBASIC20.7■□□□□ 0.9
LIM2P55344 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIM2P55344 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.7■□□□□ 0.9
LIM2P55344 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIM2P55344 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIM2P55344 ECEL1P1-201ENST00000373592 1742 ntBASIC20.7■□□□□ 0.9
LIM2P55344 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.69■□□□□ 0.9
LIM2P55344 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LIM2P55344 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 MIR638-201ENST00000385237 100 ntBASIC20.69■□□□□ 0.9
LIM2P55344 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.69■□□□□ 0.9
LIM2P55344 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 AC068587.7-201ENST00000641602 218 ntBASIC20.69■□□□□ 0.9
LIM2P55344 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.69■□□□□ 0.9
LIM2P55344 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIM2P55344 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LIM2P55344 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LIM2P55344 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LIM2P55344 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LIM2P55344 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 MIR939-201ENST00000401314 82 ntBASIC20.68■□□□□ 0.9
LIM2P55344 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.68■□□□□ 0.9
LIM2P55344 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.68■□□□□ 0.9
LIM2P55344 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.68■□□□□ 0.9
LIM2P55344 AC027682.1-201ENST00000562846 899 ntBASIC20.68■□□□□ 0.9
LIM2P55344 AF213884.3-201ENST00000563833 479 ntBASIC20.68■□□□□ 0.9
LIM2P55344 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.68■□□□□ 0.9
LIM2P55344 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.68■□□□□ 0.9
LIM2P55344 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.68■□□□□ 0.9
LIM2P55344 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LIM2P55344 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIM2P55344 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms