Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.33■■□□□ 1.33
VCPP55072 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.33■■□□□ 1.33
VCPP55072 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
VCPP55072 AL358852.1-201ENST00000623174 1268 ntBASIC23.33■■□□□ 1.33
VCPP55072 TMEM191A-211ENST00000637163 1067 ntBASIC23.33■■□□□ 1.33
VCPP55072 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
VCPP55072 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
VCPP55072 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.33■■□□□ 1.32
VCPP55072 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
VCPP55072 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.32■■□□□ 1.32
VCPP55072 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
VCPP55072 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VCPP55072 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VCPP55072 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.32■■□□□ 1.32
VCPP55072 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VCPP55072 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VCPP55072 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
VCPP55072 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
VCPP55072 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
VCPP55072 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VCPP55072 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VCPP55072 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VCPP55072 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.31■■□□□ 1.32
VCPP55072 MIR3181-201ENST00000578512 73 ntBASIC23.31■■□□□ 1.32
VCPP55072 AC066615.1-201ENST00000640911 628 ntBASIC23.31■■□□□ 1.32
VCPP55072 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VCPP55072 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.3■■□□□ 1.32
VCPP55072 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.3■■□□□ 1.32
VCPP55072 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC23.3■■□□□ 1.32
VCPP55072 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
VCPP55072 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.3■■□□□ 1.32
VCPP55072 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
VCPP55072 AC080038.1-201ENST00000611274 1154 ntBASIC23.3■■□□□ 1.32
VCPP55072 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
VCPP55072 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
VCPP55072 C1orf229-201ENST00000623686 2258 ntBASIC23.3■■□□□ 1.32
VCPP55072 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
VCPP55072 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
VCPP55072 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
VCPP55072 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
VCPP55072 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
VCPP55072 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.29■■□□□ 1.32
VCPP55072 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.29■■□□□ 1.32
VCPP55072 AC009086.3-201ENST00000623486 1008 ntBASIC23.29■■□□□ 1.32
VCPP55072 AC241377.3-202ENST00000626088 1088 ntBASIC23.29■■□□□ 1.32
VCPP55072 AC241585.3-202ENST00000628937 1088 ntBASIC23.29■■□□□ 1.32
VCPP55072 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
VCPP55072 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
VCPP55072 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.29■■□□□ 1.32
VCPP55072 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
VCPP55072 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.29■■□□□ 1.32
VCPP55072 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
VCPP55072 AC233723.2-201ENST00000623798 2106 ntBASIC23.29■■□□□ 1.32
VCPP55072 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.28■■□□□ 1.32
VCPP55072 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
VCPP55072 AL117328.2-201ENST00000624617 1940 ntBASIC23.28■■□□□ 1.32
VCPP55072 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.28■■□□□ 1.32
VCPP55072 KRT18P14-201ENST00000534205 1250 ntBASIC23.28■■□□□ 1.32
VCPP55072 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.28■■□□□ 1.32
VCPP55072 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
VCPP55072 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
VCPP55072 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VCPP55072 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
VCPP55072 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VCPP55072 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.28■■□□□ 1.32
VCPP55072 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.28■■□□□ 1.32
VCPP55072 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.28■■□□□ 1.32
VCPP55072 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VCPP55072 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VCPP55072 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.27■■□□□ 1.32
VCPP55072 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VCPP55072 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
VCPP55072 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VCPP55072 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
VCPP55072 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
VCPP55072 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.26■■□□□ 1.31
VCPP55072 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.26■■□□□ 1.31
VCPP55072 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VCPP55072 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.26■■□□□ 1.31
VCPP55072 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VCPP55072 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC23.26■■□□□ 1.31
VCPP55072 RAP2CP1-201ENST00000605103 478 ntBASIC23.26■■□□□ 1.31
VCPP55072 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
VCPP55072 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
VCPP55072 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
VCPP55072 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC23.25■■□□□ 1.31
VCPP55072 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
VCPP55072 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.25■■□□□ 1.31
VCPP55072 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
VCPP55072 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms