Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NR1H2P55055 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.57■□□□□ 0.88
NR1H2P55055 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NR1H2P55055 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NR1H2P55055 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NR1H2P55055 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.57■□□□□ 0.88
NR1H2P55055 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
NR1H2P55055 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
NR1H2P55055 AC005229.4-201ENST00000610085 2198 ntBASIC20.56■□□□□ 0.88
NR1H2P55055 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
NR1H2P55055 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NR1H2P55055 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NR1H2P55055 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
NR1H2P55055 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.56■□□□□ 0.88
NR1H2P55055 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.56■□□□□ 0.88
NR1H2P55055 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.56■□□□□ 0.88
NR1H2P55055 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NR1H2P55055 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NR1H2P55055 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NR1H2P55055 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.56■□□□□ 0.88
NR1H2P55055 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NR1H2P55055 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 AL161729.1-201ENST00000604104 1402 ntBASIC20.55■□□□□ 0.88
NR1H2P55055 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
NR1H2P55055 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.55■□□□□ 0.88
NR1H2P55055 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.55■□□□□ 0.88
NR1H2P55055 AC011551.1-201ENST00000614101 683 ntBASIC20.55■□□□□ 0.88
NR1H2P55055 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.55■□□□□ 0.88
NR1H2P55055 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.55■□□□□ 0.88
NR1H2P55055 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
NR1H2P55055 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NR1H2P55055 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.54■□□□□ 0.88
NR1H2P55055 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
NR1H2P55055 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.54■□□□□ 0.88
NR1H2P55055 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
NR1H2P55055 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.54■□□□□ 0.88
NR1H2P55055 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NR1H2P55055 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.54■□□□□ 0.88
NR1H2P55055 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
NR1H2P55055 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H2P55055 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H2P55055 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H2P55055 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H2P55055 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
NR1H2P55055 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
NR1H2P55055 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H2P55055 AC021242.3-201ENST00000607598 1377 ntBASIC20.53■□□□□ 0.88
NR1H2P55055 FAM99A-202ENST00000538190 1989 ntBASIC20.53■□□□□ 0.88
NR1H2P55055 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NR1H2P55055 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.53■□□□□ 0.88
NR1H2P55055 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H2P55055 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
NR1H2P55055 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
NR1H2P55055 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
NR1H2P55055 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.52■□□□□ 0.88
NR1H2P55055 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.52■□□□□ 0.88
NR1H2P55055 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H2P55055 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H2P55055 KRT16P3-201ENST00000439127 1283 ntBASIC20.52■□□□□ 0.88
NR1H2P55055 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.52■□□□□ 0.88
NR1H2P55055 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H2P55055 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NR1H2P55055 AC080038.3-201ENST00000623346 1952 ntBASIC20.52■□□□□ 0.87
NR1H2P55055 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H2P55055 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H2P55055 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H2P55055 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H2P55055 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
NR1H2P55055 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H2P55055 MIR4281-201ENST00000580852 62 ntBASIC20.51■□□□□ 0.87
NR1H2P55055 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H2P55055 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.51■□□□□ 0.87
NR1H2P55055 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NR1H2P55055 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.51■□□□□ 0.87
NR1H2P55055 LINC01521-201ENST00000504184 1943 ntBASIC20.51■□□□□ 0.87
NR1H2P55055 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.51■□□□□ 0.87
NR1H2P55055 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.51■□□□□ 0.87
NR1H2P55055 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.5■□□□□ 0.87
NR1H2P55055 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms